Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,208,578 – 3,208,704 |
Length | 126 |
Max. P | 0.999572 |
Location | 3,208,578 – 3,208,676 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 74.60 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -18.90 |
Energy contribution | -18.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.42 |
Structure conservation index | 0.66 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3208578 98 - 22224390 AUUUGAG-------UGAGUGAAGAUAUCACACACCGAUUCGCUUCACUCAAUGAAAUGUUACUGUCUUACUGGACAGCACUUCCGAUUUCGUUGGUUAUGUUUCU----- .......-------(((((((((..(((.......)))...)))))))))..(((((((..((((((....)))))).(((..((....))..))).))))))).----- ( -27.90) >DroSec_CAF1 17920 95 - 1 GUUUGAG-------GGAGUGGAGAUAUCACACACCGAUUAGCUCCACUCAAUGGGCUCCUACUGU---GGUGGACAGCACUUCCGAUCUCGCCGGUUAUGUUUCU----- ....(((-------(((((((((..(((.......)))...))))))))(((.(((.((......---))((((.......)))).....))).)))...)))).----- ( -26.70) >DroEre_CAF1 19875 102 - 1 AUUUGAGCUAGAGUGGAGUGGAGAUAUCAC--AUCGCAUAGCUCCAUUCAAUGGGCUGUUACUGU------GGACAGCACUUCCGAGCUCGCUGGUUGUGUUUCUGUUCU ....(((((.(((((((((.(.(((.....--))).)...))))))))).....((((((.....------.)))))).......))))).................... ( -31.50) >consensus AUUUGAG_______GGAGUGGAGAUAUCACACACCGAUUAGCUCCACUCAAUGGGCUGUUACUGU_____UGGACAGCACUUCCGAUCUCGCUGGUUAUGUUUCU_____ ...............((((((((..(((.......)))...))))))))......................(((((..(((..((....))..)))..)))))....... (-18.90 = -18.90 + 0.00)
Location | 3,208,603 – 3,208,704 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 72.31 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -18.37 |
Energy contribution | -19.16 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.12 |
Mean z-score | -1.61 |
Structure conservation index | 0.64 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925054 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3208603 101 + 22224390 GUGCUGUCCAGUAAGACAGUAACAUUUCAUUGAGUGAAGCGAAUCGGUGUGUGAUAUCUUCACUCACUCAAAUCAA-----AAUGGGCACUAUAUGCUAUCUAUAA .(((((((......))))))).(((((..((((((((.(((......)))((((.....))))))))))))....)-----))))((((.....))))........ ( -26.20) >DroSec_CAF1 17945 95 + 1 GUGCUGUCCACC---ACAGUAGGAGCCCAUUGAGUGGAGCUAAUCGGUGUGUGAUAUCUCCACUCCCUCAAACAGA-----AAUGGGCCUGCUGUGACGUC---AG ...(((.(...(---(((((((..(((((((((((((((...((((.....))))..))))))))..((.....))-----)))))))))))))))..).)---)) ( -36.80) >DroYak_CAF1 22708 95 + 1 GUGCUGUCC------ACAGUAACAGCCCAUUGAAUGGAGCUAUGCGGU--GUGAUAUCUCCACUCCCUCAAAUGAAAUGAGAAUAGGCCUGAUGUGACGUC---AG .(((((...------.)))))...(((.(((((.(((((.(((.....--...))).))))).)).((((.......))))))).)))((((((...))))---)) ( -23.30) >consensus GUGCUGUCCA_____ACAGUAACAGCCCAUUGAGUGGAGCUAAUCGGUGUGUGAUAUCUCCACUCCCUCAAAUAAA_____AAUGGGCCUGAUGUGACGUC___AG .((((((........))))))...(((((((((((((((...((((.....))))..))))))))................))))))).................. (-18.37 = -19.16 + 0.78)
Location | 3,208,603 – 3,208,704 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 72.31 |
Mean single sequence MFE | -31.65 |
Consensus MFE | -18.54 |
Energy contribution | -19.43 |
Covariance contribution | 0.90 |
Combinations/Pair | 1.16 |
Mean z-score | -2.67 |
Structure conservation index | 0.59 |
SVM decision value | 3.74 |
SVM RNA-class probability | 0.999572 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3208603 101 - 22224390 UUAUAGAUAGCAUAUAGUGCCCAUU-----UUGAUUUGAGUGAGUGAAGAUAUCACACACCGAUUCGCUUCACUCAAUGAAAUGUUACUGUCUUACUGGACAGCAC .........((((...)))).((((-----((...(((((((((((((...............))))).)))))))).))))))...((((((....))))))... ( -26.36) >DroSec_CAF1 17945 95 - 1 CU---GACGUCACAGCAGGCCCAUU-----UCUGUUUGAGGGAGUGGAGAUAUCACACACCGAUUAGCUCCACUCAAUGGGCUCCUACUGU---GGUGGACAGCAC ((---(.(..(((((..((((((((-----((.....))..((((((((..(((.......)))...))))))))))))))))....))))---)..)..)))... ( -37.80) >DroYak_CAF1 22708 95 - 1 CU---GACGUCACAUCAGGCCUAUUCUCAUUUCAUUUGAGGGAGUGGAGAUAUCAC--ACCGCAUAGCUCCAUUCAAUGGGCUGUUACUGU------GGACAGCAC ((---(...(((((...((((((((((((.......)))).((((((((.(((...--.....))).)))))))))))))))).....)))------)).)))... ( -30.80) >consensus CU___GACGUCACAUCAGGCCCAUU_____UUCAUUUGAGGGAGUGGAGAUAUCACACACCGAUUAGCUCCACUCAAUGGGCUGUUACUGU_____UGGACAGCAC .................((((((((.....((.....))..((((((((..(((.......)))...))))))))))))))))....((((........))))... (-18.54 = -19.43 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:17 2006