Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 452,196 – 452,295 |
Length | 99 |
Max. P | 0.685285 |
Location | 452,196 – 452,295 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 93.27 |
Mean single sequence MFE | -28.47 |
Consensus MFE | -22.87 |
Energy contribution | -22.77 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.15 |
Structure conservation index | 0.80 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 452196 99 + 22224390 AUGAAAUACAUUGCAAUAGGAAUAGAAAUGCAGAUAGGACGCGUUCCGAUUCUUUGGAAUGCUGCCUUCGCAGCACUAUAUCCAAAAGUUCGAAAGCUA ..................(((((((...(((.((.(((..(((((((((....)))))))))..))))))))...)))).)))...(((......))). ( -27.40) >DroSec_CAF1 54426 99 + 1 UUGAAAUACAUGGCAAUAGGAAUAGAAAGGCAGCUAGGACGUGUCCCGAUUCUUCGGAAUGCUGCCUUCGCAGCACUAUCUCCAAAAGUACGAGAGCUA ..........((((..((((....(((.((((((..(((....)))..((((....)))))))))))))....).)))((((.........)))))))) ( -28.10) >DroSim_CAF1 33453 99 + 1 UUGAAAUACAUGGCAAUAGGAAUAGAAAGGCAGCUAGGACGUGUUCCGAUUCUUCGGAAUGCUGCCUUCGCAGCACUAUCUCCAAAAGUUCGAGAGCUA (((((.....(((..(((((....(((.((((((........(((((((....))))))))))))))))....).))))..)))....)))))...... ( -29.90) >consensus UUGAAAUACAUGGCAAUAGGAAUAGAAAGGCAGCUAGGACGUGUUCCGAUUCUUCGGAAUGCUGCCUUCGCAGCACUAUCUCCAAAAGUUCGAGAGCUA ..................(((((((....((....(((..(((((((((....)))))))))..)))..))....)))).)))...(((......))). (-22.87 = -22.77 + -0.11)
Location | 452,196 – 452,295 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 93.27 |
Mean single sequence MFE | -28.94 |
Consensus MFE | -23.34 |
Energy contribution | -23.57 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.10 |
Mean z-score | -2.43 |
Structure conservation index | 0.81 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 452196 99 - 22224390 UAGCUUUCGAACUUUUGGAUAUAGUGCUGCGAAGGCAGCAUUCCAAAGAAUCGGAACGCGUCCUAUCUGCAUUUCUAUUCCUAUUGCAAUGUAUUUCAU ..((((((((..(((((((....(((((((....))))))))))))))..)))))).))........((((.............))))........... ( -30.42) >DroSec_CAF1 54426 99 - 1 UAGCUCUCGUACUUUUGGAGAUAGUGCUGCGAAGGCAGCAUUCCGAAGAAUCGGGACACGUCCUAGCUGCCUUUCUAUUCCUAUUGCCAUGUAUUUCAA ........((((...(((..((((...((.(((((((((((((....)))).((((....)))).))))))))).))...))))..))).))))..... ( -29.40) >DroSim_CAF1 33453 99 - 1 UAGCUCUCGAACUUUUGGAGAUAGUGCUGCGAAGGCAGCAUUCCGAAGAAUCGGAACACGUCCUAGCUGCCUUUCUAUUCCUAUUGCCAUGUAUUUCAA ........(((....(((..((((...((.(((((((((.((((((....)))))).........))))))))).))...))))..))).....))).. ( -27.00) >consensus UAGCUCUCGAACUUUUGGAGAUAGUGCUGCGAAGGCAGCAUUCCGAAGAAUCGGAACACGUCCUAGCUGCCUUUCUAUUCCUAUUGCCAUGUAUUUCAA ..(.((((((..(((((((....(((((((....))))))))))))))..))))))).......................................... (-23.34 = -23.57 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:32 2006