Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,207,451 – 3,207,563 |
Length | 112 |
Max. P | 0.633824 |
Location | 3,207,451 – 3,207,563 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.45 |
Mean single sequence MFE | -35.88 |
Consensus MFE | -23.44 |
Energy contribution | -23.82 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.13 |
Mean z-score | -1.78 |
Structure conservation index | 0.65 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633824 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3207451 112 - 22224390 UCCCGCAUAGCUGGCUAAAAAGGAUUCCUAAAAC---GAUGGGCAUGCGAUAUGCGAUGAAUGGACCAACAGC-----GCAGGAGUCUAGGGGCGCUACAGUGUGGCGCAUAGAUAUAGU ((((((((.(((.((.....(((...))).....---).).))))))))...((((.....((......)).)-----))))))(((((...(((((((...))))))).)))))..... ( -32.60) >DroSec_CAF1 16765 103 - 1 UCCCGCAUUGCUGGC--AAAAGGGUCCCUAAAAC---GAUGGGCAUG-------CGAUGAAUGGACCAACAUC-----GCAGGAGUCUAGGGGCGCUACAGUGUGGGGCAUGGAUAUAGU ((((((((((.((((--......(((((((....---(((...(.((-------(((((..........))))-----))).).))))))))))))))))))))))))............ ( -38.20) >DroEre_CAF1 18591 106 - 1 UCCCGCAUUGAUGGU--AAAAGGGUCCCUAAAACGACGAUGGGCAUC-------CAAUGAAUGGACCAACAUC-----GCAGCGGUCUAGGGGUGCCACAGUGUGGGGCACAGAUAUAGU ((((((((((.((((--(......((((((...((.(((((....((-------((.....))))....))))-----)...))...)))))))))))))))))))))............ ( -39.40) >DroYak_CAF1 21355 108 - 1 UCCCGCAUUGAUGGA--AAAAGGGUCCCUAAAAC---GAUGGGCAUG-------CAAUGAAUGGACCAACAUCGUAUCGCAGGAGUCUAGGGGCGCUACAGUGUGGGGCACAGAUAUAGG ((((((((((.(...--.).((.(((((((..((---(((((((((.-------......)))..))..)))))).((....))...))))))).)).))))))))))............ ( -33.30) >consensus UCCCGCAUUGAUGGC__AAAAGGGUCCCUAAAAC___GAUGGGCAUG_______CAAUGAAUGGACCAACAUC_____GCAGGAGUCUAGGGGCGCUACAGUGUGGGGCACAGAUAUAGU ((((((((((.((((........(((((((.......(.(((.(((..............)))..))).)........((....)).)))))))))))))))))))))............ (-23.44 = -23.82 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:15 2006