Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,205,549 – 3,205,693 |
Length | 144 |
Max. P | 0.810906 |
Location | 3,205,549 – 3,205,661 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.52 |
Mean single sequence MFE | -31.65 |
Consensus MFE | -20.75 |
Energy contribution | -21.25 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.07 |
Mean z-score | -1.79 |
Structure conservation index | 0.66 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810906 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3205549 112 + 22224390 --------UUUCUUUAAUUGCAACAAUUCCUGCACGCUUUUUAUUGUGGCACCUUUGCGUUGGCUGGCCGCCGCAGAGGCAAACAUCUCUGUUGCAAUUGUCGGUCAUUAGCACGCUGAU --------..((..(((((((((((.....(((.(((........))))))((((((((.(((....))).))))))))..........)))))))))))..))..(((((....))))) ( -37.30) >DroSec_CAF1 15002 106 + 1 --------UUUCUUUCAGUGCAACAAUUCCUGCAC----UUUAUUGAGGCACCUUUGCGUUGGCA-GCCGCCGCAGAAGCA-ACAUCUCUGUUGCAAUUGUCGGUCAUUAGCACGCUGAU --------......(((((((.((((((.((((..----......((.(((....))).))(((.-...)))))))..(((-(((....)))))))))))).)((.....)).)))))). ( -29.60) >DroEre_CAF1 16717 85 + 1 ---------------------------------ACUUUUUCUUUCAGUGCACCUCUGCGUUGGCA-GCCGCCGCAGAAGCG-ACAUCUCUGUUGCAAUUGUCGGUCAUUAGCACGCUGAU ---------------------------------.............(((((((((((((.(((..-.))).)))))).(((-(((....)))))).......))).....))))...... ( -25.20) >DroYak_CAF1 19337 118 + 1 CGCACAGAUUUCUUCCAGUGCAGCAAUUCCUGCACUCUUUUUAUUGAGGCACCUUUGCGUUGGCA-GCCGCCGCAGAAGCG-ACAUCUCUGUUGCAAUUGUCGGUCAUUAGCACGCUGAU .((((.((.....))..)))).((((....(((.(((........))))))...))))((..((.-((.(((((((..(((-(((....))))))..))).)))).....))..))..)) ( -34.50) >consensus ________UUUCUUUCAGUGCAACAAUUCCUGCACUCUUUUUAUUGAGGCACCUUUGCGUUGGCA_GCCGCCGCAGAAGCA_ACAUCUCUGUUGCAAUUGUCGGUCAUUAGCACGCUGAU .................(((((........))))).............(.(((((((((.(((....))).)))))).(((.(((....)))))).......))))(((((....))))) (-20.75 = -21.25 + 0.50)
Location | 3,205,581 – 3,205,693 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.42 |
Mean single sequence MFE | -32.75 |
Consensus MFE | -23.74 |
Energy contribution | -23.80 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.86 |
Structure conservation index | 0.72 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3205581 112 + 22224390 UUAUUGUGGCACCUUUGCGUUGGCUGGCCGCCGCAGAGGCAAACAUCUCUGUUGCAAUUGUCGGUCAUUAGCACGCUGAUC--------CUCGACUUGUAACUUGACCUCCCCACUAUAU .(((.((((..((((((((.(((....))).))))))))......((...(((((((..(((((..(((((....))))).--------.))))))))))))..)).....)))).))). ( -38.20) >DroSec_CAF1 15030 110 + 1 UUAUUGAGGCACCUUUGCGUUGGCA-GCCGCCGCAGAAGCA-ACAUCUCUGUUGCAAUUGUCGGUCAUUAGCACGCUGAUC--------CUCGACUUGUAACUUGACCUCCCCACUAUAU .....((((((..((((((.(((..-.))).)))))).(((-(((....))))))....(((((..(((((....))))).--------.)))))........)).)))).......... ( -30.40) >DroEre_CAF1 16724 110 + 1 CUUUCAGUGCACCUCUGCGUUGGCA-GCCGCCGCAGAAGCG-ACAUCUCUGUUGCAAUUGUCGGUCAUUAGCACGCUGAUC--------CCCGACUUGAAACUUGACCUCCCCACUAUAU .....((((....((((((.(((..-.))).)))))).(((-(((....))))))....(((((..(((((....))))).--------.))))).................)))).... ( -33.20) >DroYak_CAF1 19377 118 + 1 UUAUUGAGGCACCUUUGCGUUGGCA-GCCGCCGCAGAAGCG-ACAUCUCUGUUGCAAUUGUCGGUCAUUAGCACGCUGAUCCCCCGAUCCCCUACUUGUAACUUGACCUCCCCACUAUAU .....((((((..((((((.(((..-.))).)))))).(((-(((....))))))....(((((..(((((....)))))...)))))...............)).)))).......... ( -29.20) >consensus UUAUUGAGGCACCUUUGCGUUGGCA_GCCGCCGCAGAAGCA_ACAUCUCUGUUGCAAUUGUCGGUCAUUAGCACGCUGAUC________CCCGACUUGUAACUUGACCUCCCCACUAUAU ........((...((((((.(((....))).)))))).)).....((...(((((((..(((((..(((((....)))))..........))))))))))))..)).............. (-23.74 = -23.80 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:13 2006