Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,204,690 – 3,204,810 |
Length | 120 |
Max. P | 0.561351 |
Location | 3,204,690 – 3,204,810 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.57 |
Mean single sequence MFE | -22.15 |
Consensus MFE | -15.84 |
Energy contribution | -15.28 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.22 |
Mean z-score | -1.51 |
Structure conservation index | 0.72 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3204690 120 + 22224390 UUUAAGCCUAAUACUUAGGGUGUUUUCCCCUGCUCGACCAAAAGGUGUUGAAACGUUUCUUUGCCACUCGGCACCUUUACCUUUCCAUAAUCCCGAUUACUUACGCUUACUUUUUUUUGU ..(((((.(((....(((((.(....))))))........(((((((((((...((......))...)))))))))))......................))).)))))........... ( -23.90) >DroSec_CAF1 14074 110 + 1 UUUAAGCCUGAUACUUAGGGUGUUUUCCCCUGUUGGACCAAGAGGUGUUGA-ACGUUUCUUUGGCACUCGGCGCCUUUACCUUUCCAUAAUCCCGAUUACUUACACUU----UU-----U ..((((.........(((((.(....)))))).((((...(((((((((((-..(((.....)))..))))))))))).....))))............)))).....----..-----. ( -23.60) >DroEre_CAF1 15751 107 + 1 UUUAAGCCUGAUACUUAGGGUUUUCUCCCCUGUUCGACCAGGAGGUGUUGA-ACAUUUCUUUGCCACUCGGCACCUUUACCUUUCCAUAAUCCCAAAUACUUAUAUUU------------ ..((((((((.....(((((.......)))))......))))(((((((((-.((......))....))))))))).......................)))).....------------ ( -21.70) >DroYak_CAF1 18321 107 + 1 UUUAAGCCAGAUACUUAGGGUGUUUUCGCCUCUUCGAACAAGAAGUGUUGA-ACAUUUCUUUGCCACUCGGCACCUUUACCUUUCCAUAAUCCCGAUUACUUCCACUU------------ .................(((.((..(((...........((((((((....-.))))))))((((....))))....................)))..)).)))....------------ ( -19.40) >consensus UUUAAGCCUGAUACUUAGGGUGUUUUCCCCUGUUCGACCAAGAGGUGUUGA_ACAUUUCUUUGCCACUCGGCACCUUUACCUUUCCAUAAUCCCGAUUACUUACACUU____________ .................(((.....((........))...(((((((((((..((......))....))))))))))).............))).......................... (-15.84 = -15.28 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:11 2006