Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,199,008 – 3,199,115 |
Length | 107 |
Max. P | 0.570169 |
Location | 3,199,008 – 3,199,115 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 84.80 |
Mean single sequence MFE | -32.86 |
Consensus MFE | -22.30 |
Energy contribution | -22.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.58 |
Structure conservation index | 0.68 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3199008 107 + 22224390 UGCGCUGGCGACGACGGUUGUUUGAAAAAAAG--AGAAAGCAAAAAACAGGACAUGCCGCUUGAAGUGCCGAUCGUAAGCGAGUCCUUUCGAUUCGCA---AAUCGUCGGCA ...((((((((((((((((((((.........--...))))).....((((........))))....)))).))))..(((((((.....))))))).---...))))))). ( -34.50) >DroSec_CAF1 8484 104 + 1 UGCGCUGGCGACGACGGUUGUUUGAAAGAGAGAAAGAAAGCAA-----AGGACAUGCCGCUUGAAAUGCCGAUCGUUAGCGAGUCCUUUCGUUUCGCA---AGUCGUCGGCA ...((((((((((((((((((((....))).......((((..-----.((.....)))))).......)))))))).(((((.........))))).---.))))))))). ( -33.20) >DroEre_CAF1 8675 97 + 1 UGCGCUGGCGACGACGGUUGUUUGAAAA-GUG----AAGGAAA-----AGGACAUGCCGCUUGAAAUGUCGAUCGUAGGCGAGUCCUUUCGUUUCGCA---AA--GUCGGCA ...(((((((((....))).........-(((----(((..((-----(((((.((((...(((........)))..)))).)))))))..)))))).---..--)))))). ( -34.40) >DroYak_CAF1 10383 101 + 1 UGCGCUGGCGACGACGGUUGUUUGAAAAUGAG----AAGGAAA-----AGGACAUGCCGCUUGAAAUGCCGAUCGUAAGCGAGUCCUUUCGCUUAAAAUGCAA--GUCGGCA ...((((((..((((((((((((.........----.......-----.))))).)))).)))...(((......((((((((....))))))))....))).--)))))). ( -29.33) >consensus UGCGCUGGCGACGACGGUUGUUUGAAAAAGAG____AAAGAAA_____AGGACAUGCCGCUUGAAAUGCCGAUCGUAAGCGAGUCCUUUCGUUUCGCA___AA__GUCGGCA ...((((((....(((((((.............................((.....))((.......)))))))))(((((((....)))))))...........)))))). (-22.30 = -22.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:10 2006