Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,194,993 – 3,195,104 |
Length | 111 |
Max. P | 0.988758 |
Location | 3,194,993 – 3,195,104 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -28.75 |
Consensus MFE | -16.53 |
Energy contribution | -17.75 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.11 |
Mean z-score | -3.48 |
Structure conservation index | 0.57 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.986913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3194993 111 + 22224390 AAAUCAGUUACUGACACGAUUAUAUACGCCUAAAUUUACGCUUUCAUAAUCGAUGUCAGUUCUGAAUUCAAGUACCAAAUGAAAGUCAACACUCGCAAAUAAUUUUGAUUG ...((((..((((((((((((((..(.((.((....)).)).)..))))))).))))))).))))..(((((.......((..(((....)))..))......)))))... ( -24.12) >DroSec_CAF1 4592 104 + 1 AAAUCAGUUACUGACAUGGUUAUAUAGGC----AUUUGUGCUUUCAAAAUCCAUGUCAGUUCUGAAUUCAAGUACCAAAUGAGAGUC-ACACUCGCA-AUAACUUUGAU-G ...((((..((((((((((......((((----(....))))).......)))))))))).))))..(((((.......((.(((..-...))).))-.....))))).-. ( -29.62) >DroYak_CAF1 6518 104 + 1 AACUCAGUUACUGACACGGUAG--GGGGCAUAGAUUU-UCCUUUCA-AAUCCGUGUCAGUUCUGAGUUCAAGUACCAAAUGAAACUC-AAACUCGUA-AUAACUGUGUU-G (((.(((((((((((((((.((--((((........)-)))))...-...)))))))))....(((((..(((..(....)..))).-.)))))...-.)))))).)))-. ( -32.50) >consensus AAAUCAGUUACUGACACGGUUAUAUAGGC_UA_AUUU_UGCUUUCA_AAUCCAUGUCAGUUCUGAAUUCAAGUACCAAAUGAAAGUC_ACACUCGCA_AUAACUUUGAU_G ...((((..((((((((((......((((..........)))).......)))))))))).)))).............................................. (-16.53 = -17.75 + 1.23)
Location | 3,194,993 – 3,195,104 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -29.97 |
Consensus MFE | -18.14 |
Energy contribution | -18.15 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.15 |
Mean z-score | -3.17 |
Structure conservation index | 0.61 |
SVM decision value | 2.13 |
SVM RNA-class probability | 0.988758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3194993 111 - 22224390 CAAUCAAAAUUAUUUGCGAGUGUUGACUUUCAUUUGGUACUUGAAUUCAGAACUGACAUCGAUUAUGAAAGCGUAAAUUUAGGCGUAUAUAAUCGUGUCAGUAACUGAUUU ...((((.((((..((.((((....)))).))..))))..))))..((((.(((((((.((((((((...((.((....)).))...)))))))))))))))..))))... ( -30.50) >DroSec_CAF1 4592 104 - 1 C-AUCAAAGUUAU-UGCGAGUGU-GACUCUCAUUUGGUACUUGAAUUCAGAACUGACAUGGAUUUUGAAAGCACAAAU----GCCUAUAUAACCAUGUCAGUAACUGAUUU .-.((((.((...-((.(((...-..))).))......))))))..((((.((((((((((.((......(((....)----))......))))))))))))..))))... ( -25.40) >DroYak_CAF1 6518 104 - 1 C-AACACAGUUAU-UACGAGUUU-GAGUUUCAUUUGGUACUUGAACUCAGAACUGACACGGAUU-UGAAAGGA-AAAUCUAUGCCCC--CUACCGUGUCAGUAACUGAGUU .-(((.(((((..-...(((((.-.(((.((....)).)))..)))))...((((((((((...-....(((.-............)--)).))))))))))))))).))) ( -34.02) >consensus C_AUCAAAGUUAU_UGCGAGUGU_GACUUUCAUUUGGUACUUGAAUUCAGAACUGACAUGGAUU_UGAAAGCA_AAAU_UA_GCCUAUAUAACCGUGUCAGUAACUGAUUU ................((((((........))))))..........((((.((((((((((...............................))))))))))..))))... (-18.14 = -18.15 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:09 2006