Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,193,170 – 3,193,262 |
Length | 92 |
Max. P | 0.987068 |
Location | 3,193,170 – 3,193,262 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 82.31 |
Mean single sequence MFE | -26.83 |
Consensus MFE | -18.96 |
Energy contribution | -18.30 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.09 |
Mean z-score | -3.11 |
Structure conservation index | 0.71 |
SVM decision value | 2.07 |
SVM RNA-class probability | 0.987068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3193170 92 - 22224390 AUGUAUAUCUACAUCUGCAUAUUUCUAUAACCAAAGUGGGGCAGGCGAAUGUCGGCCAAGGGAUGUGAAAGAUGUGAAAGAUGUGGAUGUGG ...(((((((((((((.(((((..((....((.....))(((.(((....))).))).))..)))))...........))))))))))))). ( -32.10) >DroSec_CAF1 2747 76 - 1 GCGUAUAUCUACAUCUGCAUAUUUCUAUAACCGAA-UGGGGCAGGCAAAUGUGGGCCAAGGGAUGUGGAAGAU---------------GCGG .(((((.(((((((((........((((......)-)))(((..((....))..)))...)))))))))..))---------------))). ( -24.20) >DroSim_CAF1 3065 76 - 1 GCGUAUAUCUACAUCUGCAUAUUUCUAUAACCGAA-UGGGGCAGGCAAAUGUGGGCCAAGGGAUGUGGAAGAU---------------GCGG .(((((.(((((((((........((((......)-)))(((..((....))..)))...)))))))))..))---------------))). ( -24.20) >consensus GCGUAUAUCUACAUCUGCAUAUUUCUAUAACCGAA_UGGGGCAGGCAAAUGUGGGCCAAGGGAUGUGGAAGAU_______________GCGG (((((....)))((((.(((((..((....((.....))(((..((....))..))).))..)))))..))))...............)).. (-18.96 = -18.30 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:05 2006