Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,191,451 – 3,191,549 |
Length | 98 |
Max. P | 0.809796 |
Location | 3,191,451 – 3,191,549 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.15 |
Mean single sequence MFE | -20.40 |
Consensus MFE | -13.50 |
Energy contribution | -15.00 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.66 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3191451 98 + 22224390 ----ACACAAA--UUUUC--UCGAAUCGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUGCGAGC--CAAU ----.......--....(--((....(....).(((........((((((......))))))((((((.((((((....))))))))))))....)))))).--.... ( -20.70) >DroVir_CAF1 1184 92 + 1 ---------AA---UCCG--ACGAAUGUAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUAAGAGC--CCAA ---------..---....--...........(.((.........((((((......))))))((((((.((((((....)))))))))))).........))--.).. ( -17.10) >DroPse_CAF1 1704 89 + 1 -----------------GCGUUGGAUUGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUGCGAAC--CAAG -----------------...((((........((((.(((...))).))))..((((..((((....((((((((....)))))))).))))..))))...)--))). ( -20.70) >DroGri_CAF1 1110 100 + 1 --A-AGCCAAA---GCCG--UCGAAUUGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUACGAACACCCAA --.-.......---....--(((.....................((((((......))))))((((((.((((((....))))))))))))......)))........ ( -17.30) >DroWil_CAF1 1490 99 + 1 CCGAGCG---C--CGUUC--GAGAAUUGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUGGAAGC--CAAC (((.(((---(--..(((--((...))))).)))).........((((((......))))))((((((.((((((....))))))))))))....)))....--.... ( -22.80) >DroAna_CAF1 1765 101 + 1 -----UCACUUUUUUUUCCGACGAAUUGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUGCGAAC--CAAG -----((((((((..(((....)))..))))))(((........((((((......))))))((((((.((((((....))))))))))))....)))))..--.... ( -23.80) >consensus _________AA___UUUC__UCGAAUUGAAAGUGCAAAAUUAAAUUAUGCAGAGCAGCAUAAAAACAGAUGAAGUGGAAAUUUCAUUGUUUAACCUGCGAAC__CAAA ............................................((((((......))))))((((((.((((((....))))))))))))................. (-13.50 = -15.00 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:04 2006