Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,188,989 – 3,189,079 |
Length | 90 |
Max. P | 0.652143 |
Location | 3,188,989 – 3,189,079 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 92.21 |
Mean single sequence MFE | -18.21 |
Consensus MFE | -13.88 |
Energy contribution | -14.08 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.76 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3188989 90 - 22224390 GUGUUAUUUAUUUUGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAUUAAUUAAAGUGUGAGACGACAACAAAAAAAAAACACAAACACCAA (((((.(((.(((((((.((((((.......((((.(((((.........)))))))))))))))))))))).))))))))......... ( -21.61) >DroSec_CAF1 4372 77 - 1 GUGUUA----UUUUGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAUUAAUUAAAGUGUGAGACGACAA-------AAAA--CACACACCAA (((((.----.....(((((((((.......((((.(((((.........)))))))))))))))))-------).))--)))....... ( -17.11) >DroSim_CAF1 4453 76 - 1 GUGUUA----UUUUGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAU-AAUUAAAGUGUGAGACGACAA-------AAAA--CACACACCAA (((((.----.....(((((((((.......((((.(((((....-....)))))))))))))))))-------).))--)))....... ( -17.91) >DroEre_CAF1 3207 77 - 1 GUGUUA----UUUGGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAUUAAUUAAAGUGUGAGACGACAA-------AAAA--CACACACCAA ......----.(((((.(((.((..((((.(((.(((((((.........)))))).).))).))))-------...)--)))).))))) ( -17.30) >DroYak_CAF1 3165 77 - 1 GUGUUA----UUUUGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAUUAAUUAAAGUGUGAGACGACAA-------AAAA--CACACACCAA (((((.----.....(((((((((.......((((.(((((.........)))))))))))))))))-------).))--)))....... ( -17.11) >consensus GUGUUA____UUUUGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAUUAAUUAAAGUGUGAGACGACAA_______AAAA__CACACACCAA ((((............((((((((.......((((.(((((.........)))))))))))))))))..............))))..... (-13.88 = -14.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:03 2006