| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,175,830 – 3,175,935 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 3,175,830 – 3,175,935 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.64 |
| Mean single sequence MFE | -16.79 |
| Consensus MFE | -9.62 |
| Energy contribution | -9.97 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3175830 105 + 22224390 CUUUAGACUAAAUAAAAGCACAAGAAAACCAGUUGAGAACCAAAAUCAACAAUAGCGAAAUUUUCCUAUUUCGCGUUCGCAACUGUUUUGAUUGUCAAAAAAAAA .................(.((((..(((.((((((.((((..............(((((((......))))))))))).)))))).)))..)))))......... ( -22.13) >DroSec_CAF1 133074 97 + 1 CUUUAGACCAAAUAGAA-CACAAGAAAACUAGUCGAGAACCA-AAUCAACA--AGCGAAAUUUUCCUAUUUCGCGUUCGCAACUGUUUUGACUGUAAAAAA---- .................-...........(((((((((....-........--.(((((((......)))))))...........))))))))).......---- ( -16.05) >DroEre_CAF1 141035 101 + 1 GUUUCGAACAAAUAAAA---GAAGAAUACCAGUUAAAAACCA-AUUCCACAAAGGAUCAAUUUUCCUAUUUUGCGUACGCAACUGUUUUGACUAUGCACAAAAAA .................---..........((((((((....-.........((((.......))))...((((....))))...))))))))............ ( -12.20) >consensus CUUUAGACCAAAUAAAA_CACAAGAAAACCAGUUGAGAACCA_AAUCAACAA_AGCGAAAUUUUCCUAUUUCGCGUUCGCAACUGUUUUGACUGUAAAAAAAAAA .............................(((((((((................(((((((......)))))))(....).....)))))))))........... ( -9.62 = -9.97 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:01 2006