Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,165,263 – 3,165,360 |
Length | 97 |
Max. P | 0.758689 |
Location | 3,165,263 – 3,165,360 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 88.87 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -27.99 |
Energy contribution | -27.90 |
Covariance contribution | -0.09 |
Combinations/Pair | 1.03 |
Mean z-score | -1.35 |
Structure conservation index | 0.94 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.758689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3165263 97 - 22224390 AUGGGCCGCAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCUGCCGAGUCUCAGAUGUGUCAGUUUGUUGGCCCAGCUGCAAUUUGAGGCUUUUGUGCU .(((((((.((..((((((.(((((...(((((((....)).)))).)..))))))).))))..)))))))))((.((((..........)))))). ( -30.50) >DroSec_CAF1 122634 97 - 1 AUGGGCCGCAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCUGCCGAGUCUUAGAUGUGUCAGUUUGUUGGCCCAGCUGCAAUUUGAGGCUUUUGUGCU .(((((((.((..((((((.(((((...(((((((....)).)))).)..))))))).))))..)))))))))((.((((..........)))))). ( -30.50) >DroSim_CAF1 123252 97 - 1 AUGGGCCGCAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCUGCCGAGUCUUAGAUGUGUCAGUUUGUUGGCCCAGCUGCAAUUUGAGGCUUUUGUGCU .(((((((.((..((((((.(((((...(((((((....)).)))).)..))))))).))))..)))))))))((.((((..........)))))). ( -30.50) >DroEre_CAF1 130134 97 - 1 AUGGGCCACAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCGGCCGAGUCUUAGAUGUGUCAGUUUGUUGGCCCAGCUGCAAUUUGAGGCUUUUGUGCU .(((((((.((..((((((.(((((...((((((......).)))).)..))))))).))))..)))))))))((.((((..........)))))). ( -30.00) >DroYak_CAF1 130729 74 - 1 AUGGGCCACAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCGGCCGAGUCUUAGAUGUGUCAGUUUGUUGGCCCAG----------------------- .(((((((.((..((((((.(((((...((((((......).)))).)..))))))).))))..))))))))).----------------------- ( -27.50) >consensus AUGGGCCGCAUGGGCUGCAUCAUUUCCUGUUCGCAUUCCUGCCGAGUCUUAGAUGUGUCAGUUUGUUGGCCCAGCUGCAAUUUGAGGCUUUUGUGCU .(((((((.((..((((((.(((((...((((((......).)))).)..))))))).))))..)))))))))............(((......))) (-27.99 = -27.90 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:59 2006