Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,156,891 – 3,156,982 |
Length | 91 |
Max. P | 0.958869 |
Location | 3,156,891 – 3,156,982 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 82.42 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -12.26 |
Energy contribution | -11.78 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.15 |
Mean z-score | -3.16 |
Structure conservation index | 0.49 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3156891 91 - 22224390 UCGACUCUCCAG--ACCUUAUAAAUAGCAUUUAUAGGGGGGGGGGGGCUGGCUUAUG--GUUUGGUUUUUCCACAAUCAUAAAACUCAGACCAGG ....((((((..--.((((((((((...)))))))))).))))))((((((.(((((--((((((.....))).))))))))...)))).))... ( -32.00) >DroSec_CAF1 114136 75 - 1 ------AACCAG--ACCUUAUAAAUAGCAUUUAUAGGG-G---------GGCUUAUG--GUUUGGUUUUUCCACAACCAUAAAACUCAGACCAGG ------..((..--.((((((((((...))))))))))-(---------((.(((((--((((((.....))).))))))))..)))......)) ( -21.70) >DroSim_CAF1 115388 76 - 1 ------AACCAG--ACCUUAUAAAUAGCAUUUAUAGGGGG---------GGCUUAUG--GUUUGGUUUUUCCACAACCAUAAAACUCAGACCAGG ------..((..--.((((((((((...))))))))))((---------(..(((((--((((((.....))).))))))))..)))......)) ( -24.80) >DroEre_CAF1 120766 82 - 1 ------GUCUGGUUACCUUAUAAAUAGCAUUUAUAGGGGG-------AUGGCUUAUGGUAUAUGGUUUUUCCACAGCCAUAAAACUCGGACCAGG ------..((((((.((((((((((...)))))))))).(-------(.(..(((((((...(((.....)))..)))))))..))).)))))). ( -27.80) >DroYak_CAF1 122358 75 - 1 ------AACCAG--ACCUUAUAAAUAGAAUUUAUAAGGGG----------GCUUAUG--AUAUGGUUUUUCCGCAAUCAUAAAACUCAGACCAGG ------..((..--.((((((((((...))))))))))((----------(.(((((--((.(((.....)))..)))))))..)))......)) ( -17.70) >consensus ______AACCAG__ACCUUAUAAAUAGCAUUUAUAGGGGG_________GGCUUAUG__GUUUGGUUUUUCCACAACCAUAAAACUCAGACCAGG ........((.....((((((((((...))))))))))..............(((((.....(((.....)))....)))))...........)) (-12.26 = -11.78 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:58 2006