Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,155,891 – 3,156,004 |
Length | 113 |
Max. P | 0.507737 |
Location | 3,155,891 – 3,156,004 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 82.88 |
Mean single sequence MFE | -30.46 |
Consensus MFE | -18.38 |
Energy contribution | -20.75 |
Covariance contribution | 2.38 |
Combinations/Pair | 1.20 |
Mean z-score | -1.79 |
Structure conservation index | 0.60 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3155891 113 + 22224390 GUGCGGUUCAAAGCAUGUGUGUGUGUGUGUGCGUGAACUCAUAAGCGUGGUAAAAUAAGUAGGCGUCCUGUCUA-UGUAAUCAUGGAACACACAUAAUUGAACCAAAUCAAAUU ....(((((((...((((((((.((((.((......)).))))..((((((...(((..((((...))))..))-)...))))))..))))))))..))))))).......... ( -33.40) >DroSec_CAF1 113183 106 + 1 GUGGGGUUCAAACCAUGUGUG----UGCGUGCGUGAACUCAUAAGCGUGGUAAAAUAAGUAGGCGUC-UGCCUAAUG---CCAUGGAACACACAUAAUUCAAUCAAAUCAAAUU ((((((((((...(((((...----.)))))..))))))).....(((((((.......(((((...-.))))).))---)))))...)))....................... ( -29.90) >DroEre_CAF1 119785 106 + 1 GUGCGGUUCAAACCAUGUGCG----UGUGUGUGUGAGUUCAUAAGCGGGGUAAAAUAGGUUGGCGUC-UGCCUAUUA---CCAUGCAACACACAUAAUUGAGCCAAAUCAAAUU ....(((((((....((((.(----(((...((((....)))).(((.((((..((((((.......-.))))))))---)).))).)))).)))).))))))).......... ( -32.00) >DroYak_CAF1 121383 104 + 1 GUGGGGUUCCAACCAUGUG------UGUGUUUGUGAAUUCAUAAGCGGGGUAAAAUAAGUGGGCGUC-UGCCUAUUG---CCAUGCAGCACAAAUAAUUAAGCCUAAUCAAAUC ...(((((.........((------((((((((((....)))))))..((((......((((((...-.))))))))---)).....)))))........)))))......... ( -26.53) >consensus GUGCGGUUCAAACCAUGUGUG____UGUGUGCGUGAACUCAUAAGCGGGGUAAAAUAAGUAGGCGUC_UGCCUAUUG___CCAUGCAACACACAUAAUUGAACCAAAUCAAAUU ....(((((((...(((((((...........(((....)))..((((((.......(((((((.....)))))))....))))))..)))))))..))))))).......... (-18.38 = -20.75 + 2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:57 2006