Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,147,919 – 3,148,020 |
Length | 101 |
Max. P | 0.724566 |
Location | 3,147,919 – 3,148,020 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.56 |
Mean single sequence MFE | -41.27 |
Consensus MFE | -28.41 |
Energy contribution | -28.22 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.25 |
Mean z-score | -2.10 |
Structure conservation index | 0.69 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3147919 101 + 22224390 -------------CGGCAGCAGCG------GCAAUACUUCCACGUCGACGUGGUGCGGCAGCAUCAACUUCCUGGUGUAUAUGGUGUGCUCGUUUUGCUGCUGUUGCUACAACUUUCGCA -------------.((((((((((------((((.((...((((....))))(..((.((((((((......))))))...)).))..)..)).))))))))))))))............ ( -42.00) >DroSec_CAF1 105625 101 + 1 -------------CGGCAGCAGCG------GCAAUACAUCCACGUCGACGUGGUGCGGCAGCAUCAACUUCCUGGUGUAUAUGGUGUGCUCGUUUUGCUGCUGUUGCUACAACUUUCGCA -------------.((((((((((------((((.((...((((....))))(..((.((((((((......))))))...)).))..)..)).))))))))))))))............ ( -42.50) >DroEre_CAF1 112047 114 + 1 GCAUCGGCGUCAGCGGCAGCAGCG------GUAAUACUUCGACGUCGACGUGGUGCGGCAGCAUCAAUUUCCUGGUGUAUAUGGUGUGCUCGUUUUGCUGCUGUUGCUACAACUUCCGCA ......(((..((.((((((((((------((((.((.(((....)))...((..((.((((((((......))))))...)).))..)).)).))))))))))))))....))..))). ( -41.80) >DroYak_CAF1 113305 114 + 1 GCAUCGGCGUCAGCGGCAGCAGCG------GUAAUACUUCGACGUCGACGUGGUGCGGCAGCAUCAACUUCCUGGUGUAUAUGGUGUGCUCGUUUUGCUGCUGUUGCUACAACUUCCGAA ...((((.....(..(((((((((------((((.((.(((....)))...((..((.((((((((......))))))...)).))..)).)).)))))))))))))..).....)))). ( -42.80) >DroAna_CAF1 138474 120 + 1 GCAGCGGCGUCGGCAGCAGCAGCGGCGCUGGUAAUACUUCGACGUCGACGUGGUGCGGCAGCAUCAAUUUUUUGGUGUAUAUGGUGUGCUCGUUCUGCUGUUGCUGCUAUAAUUUUCGUA ((....))...((((((((((((((.((.((((.((((...((..(((..((((((....)))))).....)))..))....)))))))).)).))))))))))))))............ ( -47.70) >DroPer_CAF1 139273 105 + 1 CCAC---------CGGAGCUACCG------GCAAUACCUCAACGUCGACGUGGUGCGGCAGCAUCAAUUUUCUUGUGUAUAUGGUGUGCUCCUUCUGCUGUUGUUGCUACAAUUUUCGGA ....---------.((((((((((------...((((..(((.(......((((((....)))))).....)))).)))).))))).))))).((((..(((((....)))))...)))) ( -30.80) >consensus GCA__________CGGCAGCAGCG______GCAAUACUUCGACGUCGACGUGGUGCGGCAGCAUCAACUUCCUGGUGUAUAUGGUGUGCUCGUUUUGCUGCUGUUGCUACAACUUUCGCA .............(((((((((((......(((.((((...((..((...((((((....))))))......))..))....)))))))......))))))))))).............. (-28.41 = -28.22 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:55 2006