Locus 107

Sequence ID X_DroMel_CAF1
Location 442,951 – 443,067
Length 116
Max. P 0.750548
window141

overview

Window 1

Location 442,951 – 443,067
Length 116
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.08
Mean single sequence MFE -29.18
Consensus MFE -14.57
Energy contribution -16.55
Covariance contribution 1.98
Combinations/Pair 1.16
Mean z-score -1.86
Structure conservation index 0.50
SVM decision value 0.47
SVM RNA-class probability 0.750548
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 442951 116 - 22224390
CCAGGAAAACAGUCCUGUCGCCGGCUCGGCCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCCUAAAUGGAUAAAUGGUAUU-UUGUAUGAAUGGCUCAGCG
.(((((......)))))......(((.((((.((((((..((((.........(((((((.((((.....))))..((.....)).....)))))))-)))))))))))))).))). ( -34.00)
>DroSec_CAF1 45397 110 - 1
CCUGGAAAACAGUCCUGUCGCCAGUUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCAUAAAUGGU------AUAUU-UUGUUUGAAUGGCUCAGCG
.((((...(((....)))..))))....((.((..(((((((((..(((.(((.((((...((((.....)))).))))...))).------)))..-))))..)))))..)).)). ( -29.50)
>DroSim_CAF1 24443 110 - 1
CCUGGAAAACAGUCCUGUCGCCAGCUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCAUAAAUGGU------AUAUU-UUGUUUGAAUGGCUCAGCA
..(((...(((....)))..)))(((.((((.(((((...((((..(((.(((.((((...((((.....)))).))))...))).------)))..-)))).))))))))).))). ( -31.50)
>DroEre_CAF1 55799 91 - 1
CCAG-------------------GCUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCGUAAAUGGU------AUAUU-UUGUAUGAAUGGCCCAGCG
....-------------------(((.((((.((((((..((((..(((.(((.((((...((((.....)))).))))...))).------)))..-)))))))))))))).))). ( -29.60)
>DroYak_CAF1 43009 93 - 1
CCAA----A-------------UGCUCGGGCGAUUCAUUCGCAAUUCAAUCCAAAUGCCAAGGCGAUGCCCGCUAGCAUAAAUGGU------AUAUU-UUGUAUGAAUGGCCCAGCG
....----.-------------.(((.((((.((((((..((((......(((.((((...((((.....)))).))))...))).------.....-)))))))))).))))))). ( -32.10)
>DroAna_CAF1 64171 90 - 1
----------------------GGCCCGG-AGAUACAUUUGCAAUUUAUUCCAAAUGCCAGGACUAUUUC----AGCAUCAAUUGCAAAUAUAUAUUCUUGAAUGAAUGGCCCAGCG
----------------------((((...-..(((.((((((((((((.(((........))).))....----......)))))))))).)))((((......))))))))..... ( -18.40)
>consensus
CCAG____A_____________AGCUCGGUCGAUUCAUUCGCAAUUUAUUCCAAAUGCCAAGGCGAUUCCCGCUAGCAUAAAUGGU______AUAUU_UUGUAUGAAUGGCCCAGCG
.......................(((.((((.((((((..((((..(((.(((.((((...((((.....)))).))))...))).......)))...)))))))))))))).))). (-14.57 = -16.55 +   1.98) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:29 2006