Locus 1069

Sequence ID X_DroMel_CAF1
Location 3,130,006 – 3,130,117
Length 111
Max. P 0.500000
window1739

overview

Window 9

Location 3,130,006 – 3,130,117
Length 111
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -23.97
Consensus MFE -14.10
Energy contribution -14.22
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -1.79
Structure conservation index 0.59
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3130006 111 + 22224390
UUU-CUAGCAUUCCUUUGCGGCUU-UUUGUGGUGUUCACUGUACCUGUCCUAACGGAACAAUUUGCCACAAUAGCUGCGACCCGUGCUCACUCACUCACAGCACAUUUUAGAC
..(-((((.......((((((((.-.((((((((.....(((.....(((....))))))...)))))))).))))))))...(((((...........)))))...))))). ( -31.70)
>DroSec_CAF1 88330 105 + 1
UUU-CUGGCAUUCCUUGCCAGCUU-UUUGUGGUGUUUACUGUACCUGUCCUAACGGAACAAUUCGCCACAAUAGCU-CGACCCGUGCGCACUC-----CUGCUCAUUUUAGAC
...-.(((((.....)))))(((.-.((((((((.....(((.....(((....))))))...)))))))).)))(-(.....(((.(((...-----.))).)))....)). ( -28.60)
>DroSim_CAF1 89618 105 + 1
UUU-CUGGCAUUCCCUUCCAGCUU-UUUGUGGUGUUUACUGUACCUGUCCUAACGGAACAAUUCGCCACAAUAGCU-CGACCCGUGCGCACUC-----CUGCUCAUUUUAGAC
..(-(((((((.....((.((((.-.((((((((.....(((.....(((....))))))...)))))))).))))-.))...))))(((...-----.)))......)))). ( -27.30)
>DroEre_CAF1 93333 103 + 1
AUUAGUCGAAUUCCUUUUCGGCUU-UUAGUGGUGUUUACUGUACCUGUUCUAACCGAACAAUUUGCCACAAUAGCU-CCGGC---ACUCACUC-----CUGCGCAUUUUAGAC
...(((((((......))))))).-.(((..(((...........(((((.....)))))...((((.........-..)))---)..)))..-----)))............ ( -20.30)
>DroYak_CAF1 95319 97 + 1
AUU-UUGAAAUUCCUUUCCGGCUUUUUUGUGGUGUCUACUGUACCUGUCCUAACCGAACAAUUUGCCACAAUAGCU-CAGCC---CCUUACUC-----CUGCUCAUU------
...-...............((((...((((((((.....(((...............)))...)))))))).....-.))))---........-----.........------ ( -11.96)
>consensus
UUU_CUGGCAUUCCUUUCCGGCUU_UUUGUGGUGUUUACUGUACCUGUCCUAACGGAACAAUUUGCCACAAUAGCU_CGACCCGUGCUCACUC_____CUGCUCAUUUUAGAC
...................((((...((((((((.....(((..((((....)))).)))...)))))))).))))..................................... (-14.10 = -14.22 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:53 2006