Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,114,816 – 3,114,907 |
Length | 91 |
Max. P | 0.759041 |
Location | 3,114,816 – 3,114,907 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 80.15 |
Mean single sequence MFE | -20.69 |
Consensus MFE | -14.69 |
Energy contribution | -14.92 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.11 |
Mean z-score | -1.54 |
Structure conservation index | 0.71 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3114816 91 + 22224390 GAAAAAAGUUAAGGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAAGUCGGUGGGCUUACAGCCCAGUCCCCCG----------CAAAUAAAAGAA ............((((.....((((((......))))))......))))..(.((((((((.....))))).....)))----------)........... ( -18.10) >DroPse_CAF1 94205 100 + 1 G-UAAAAGCUGAAGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAGGUUGGUGGGCGAACGGCCCGGGCCCCCCAACUCCCGUUCCAACAAAAACA .-......((((.........((((((......))))))........))))(((((.((((.....))))(((...)))..........)))))....... ( -24.83) >DroSim_CAF1 74260 84 + 1 GAAAAAAGUUAAGGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAAGUCGGUGGGCUUACAGCCCAGUCGCCCG----------CAAAA------- ............(((......((((((......))))))((((..........))))((((.....))))....)))..----------.....------- ( -18.70) >DroEre_CAF1 74598 84 + 1 GAAAAAACUUUAGGCUACAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAAGUCGGUGGGCUUACAGCCCAGUCCCCCG----------CAAAA------- ............((((((...((((((......))))))...)).))))..(.((((((((.....))))).....)))----------)....------- ( -19.60) >DroYak_CAF1 78645 84 + 1 GAAAAAAGUUAAGGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAAGUCGGUGGGCUUACAGCCCAGUCCCCCG----------CAAAA------- ............((((.....((((((......))))))......))))..(.((((((((.....))))).....)))----------)....------- ( -18.10) >DroPer_CAF1 96749 96 + 1 G-UAAAAGCUGAAGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAGGUUGGUGGGCGAACGGCCCGGGCCCCCCAACUCCCGUUCCAACAAA---- .-......((((.........((((((......))))))........))))(((((.((((.....))))(((...)))..........)))))...---- ( -24.83) >consensus GAAAAAAGUUAAGGCUAAAAAGCAAUUAAAACAAAUUGUGCCGUAAGUCAAGUCGGUGGGCUUACAGCCCAGUCCCCCG__________CAAAA_______ ............((((.....((((((......))))))((((..........))))((((.....))))))))........................... (-14.69 = -14.92 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:44 2006