Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,107,796 – 3,107,911 |
Length | 115 |
Max. P | 0.557362 |
Location | 3,107,796 – 3,107,911 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 78.57 |
Mean single sequence MFE | -30.36 |
Consensus MFE | -20.60 |
Energy contribution | -20.20 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.27 |
Mean z-score | -1.49 |
Structure conservation index | 0.68 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3107796 115 + 22224390 AAGGAAGCUCUGAUCCAUUUU-GUUCAGUGUAUUAGCCCAUCCAUAUGUGUGCUUGUAUGCACUUUGUGUGUGUACUAGUGAGUGGAAAGUGGUGUAUUAAUUUAUCACGGUAGAA ......((.((((........-..)))).))....(((..(((((.....((((.((((((((.....)))))))).)))).)))))..((((((........))))))))).... ( -29.40) >DroSec_CAF1 66965 116 + 1 UGGGAAGCUCCUAUCCAUUUUUUUUCAGUGCAUUAGCCCAUCCAUAUGUGUUCUUGUAUGCACUAUGUGUGUGUACUAGUGAGUGGAAAAUGGUGUAUUAAUUUAUCACGGUAGAA ((((.....))))..(((..(((((((.(.((((((..((..(((((((((........)))).)))))..))..))))))).)))))))..)))......(((((....))))). ( -30.60) >DroSim_CAF1 67887 116 + 1 UGGGAAGCUCCUAUCCAUUUUUUUUCAGUGCAUUAUCCCAUCCAUAUGUGUGCUUGUAUGCACUAUGUGUGUGCACUAGUGAGUGGAAAAUGGUGUAUUAAUNNNNNNNNNNNNNN ((((.....))))..(((..(((((((.(.(((((...((..((((((.((((......))))))))))..))...)))))).)))))))..)))..................... ( -27.80) >DroEre_CAF1 67419 115 + 1 UGAAGUGUUUUGAUCCACUUU-GUGCAGUGUACCAGCCCAUCCACAAGUGUGCUGGUGUGCACUUCGUGUGUGUACGAGUGAGUGGAAAAUGGUGUAUUAAUUUAUCACGGUAGAA .............(((((((.-(((((...(((((((.(((......))).))))))))))))((((((....)))))).)))))))..((.(((((......)).))).)).... ( -34.10) >DroYak_CAF1 71752 111 + 1 UGCAAGGCUCUGAUCCUUUUC-AUGCAGUGUACUAGGCCAUCCAUA--UGCACUUGUAGGCACUUU--GUGUGUACCAGUGAGUGGAAAAUGGUGUAAUAAUUUAUCACAAGAGAA ((((..((..(((......))-).))..)))).((.(((((((((.--..((((.(((.((((...--)))).))).)))).)))))...)))).))................... ( -29.90) >consensus UGGGAAGCUCUGAUCCAUUUU_GUUCAGUGUAUUAGCCCAUCCAUAUGUGUGCUUGUAUGCACUUUGUGUGUGUACUAGUGAGUGGAAAAUGGUGUAUUAAUUUAUCACGGUAGAA ..........................(((((((((.....(((((.....((((.((((((((.....)))))))).)))).)))))...)))))))))................. (-20.60 = -20.20 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:40 2006