Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,101,931 – 3,102,031 |
Length | 100 |
Max. P | 0.755888 |
Location | 3,101,931 – 3,102,031 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 94.66 |
Mean single sequence MFE | -34.34 |
Consensus MFE | -29.90 |
Energy contribution | -29.78 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.03 |
Mean z-score | -1.36 |
Structure conservation index | 0.87 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3101931 100 - 22224390 UGGCAGGGAUU---UGUCGAGGGAUUGCUGCCGCUGUACAGGGUGACCUGGCUAAGGAUAUUGCCGCUGCUGGGCACAAAAUGUGGUUGUGAUUGCAAGAGUG .(((((.((((---(......))))).)))))(((.((((..(((.((..((...((......))...))..)))))....)))).((((....)))).))). ( -33.00) >DroSec_CAF1 61532 103 - 1 UGGCAGGGAUUUUCUGUAGAGGGAUUGCUGCCGCUGUACAGGGUGACCUGGCUGAGGAUGUUGCCGCUGCUGGGCACAAAAUGUGGUUGUGAUUGCAAGAGUG .(((((.(((((((....)).))))).)))))(((.((((..(((.((..((...((......))...))..)))))....)))).((((....)))).))). ( -33.40) >DroSim_CAF1 61808 100 - 1 UGGCAGGGAUU---CGUCGAGGGAUUGCUGCCGCUGUACAGGGUGACCUGGCUGAGGAUGUUGCCGCUGCUGGGCACAAAAUGUGGUUGUGAUUGCAAGAGUG .(((((.((((---(......))))).)))))(((.((((..(((.((..((...((......))...))..)))))....)))).((((....)))).))). ( -35.30) >DroEre_CAF1 61308 100 - 1 UGGCAGGGAUU---CGUGGAGGGAUUGCUGCCGCUGUAGAGGGUGACCUGGCUGAGGAUGUUGCCGCUGCUGGGCACAAAAUUUGGUUGUGUUUGCAAGAGUG .(((((.((((---(......))))).)))))((.(((((((....)))(((..........))).)))).((((((((.......))))))))))....... ( -35.80) >DroYak_CAF1 66293 100 - 1 GGGCAGGGAUU---CGUAGAGGGAUUGCUGCCGCUGUACAGGGUGACCUGGCUGAGGAUGUUGCCGCUACUGGGCACAAAAUGUGGUUGUGAUUGCAAGAGUG .(((((.((((---(......))))).)))))(((.(.((((....))))(((.((...((....))..)).)))......((..((....))..))).))). ( -34.20) >consensus UGGCAGGGAUU___CGUAGAGGGAUUGCUGCCGCUGUACAGGGUGACCUGGCUGAGGAUGUUGCCGCUGCUGGGCACAAAAUGUGGUUGUGAUUGCAAGAGUG .(((((.((((...........)))).)))))(((.((((..(((.((..((...((......))...))..)))))....)))).((((....)))).))). (-29.90 = -29.78 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:37 2006