Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 433,294 – 433,394 |
Length | 100 |
Max. P | 0.991194 |
Location | 433,294 – 433,394 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 87.10 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -20.95 |
Energy contribution | -21.71 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.04 |
Mean z-score | -2.98 |
Structure conservation index | 0.77 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 433294 100 + 22224390 CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGCGCU------UGUGUAUAUGUCGAACUUUCUCUCUCUGUAAGCCACA----------CACACUCACCAGAGAAGGGAAUA ..............(((((......(((.(((((((((..------..))))))))))))........((((((.........----------.........)))))))))))... ( -24.97) >DroSec_CAF1 35875 103 + 1 CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGCGCUU---CUUGUGCAUAUGUCAAACUUUCUCUCUCUGCAAGCCACA----------CACACUCACCAGAGAAGGGAACA ..............(((((....((..((((((((((((..---...))))))))))...))..))..((((((..((.....----------....))...)))))))))))... ( -27.70) >DroSim_CAF1 14761 103 + 1 CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGCGCUU---CUUGUGCAUAUGUCAAACUUUCUCUCUCUGUAAGCCACA----------CACACUCACCAGAGAAGGGAACA ..............(((((....((..((((((((((((..---...))))))))))...))..))..((((((.........----------.........)))))))))))... ( -27.77) >DroEre_CAF1 38821 101 + 1 CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGC------GCUUGUGUAUAUGUCGAACUUUCUCUCUGUGUGAGCCACA------CACACACACUCACCAGAGAAGGAA--- (((...((((..........)))).(((.((((((((------(....))))))))))))......((((((.(((((.....------........))))))))))))))..--- ( -28.92) >DroYak_CAF1 32802 113 + 1 CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGCGCAUACGCUUGUGCAUAUGUCGAACUUUCUCUCUCUGUAAGCCACACAUACACACACACACUCACCAGAGAAGGAA--- ......((((..........)))).(((.(((((((((((......))))))))))))))...(((..((((((............................))))))..)))--- ( -27.49) >consensus CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGCGCUU___CUUGUGCAUAUGUCGAACUUUCUCUCUCUGUAAGCCACA__________CACACUCACCAGAGAAGGGAA_A ..............(((((....((..((((((((((((........))))))))))...))..))..((((((............................)))))))))))... (-20.95 = -21.71 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:28 2006