Locus 1059

Sequence ID X_DroMel_CAF1
Location 3,099,477 – 3,099,586
Length 109
Max. P 0.586241
window1721

overview

Window 1

Location 3,099,477 – 3,099,586
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.63
Mean single sequence MFE -23.62
Consensus MFE -3.90
Energy contribution -5.20
Covariance contribution 1.30
Combinations/Pair 1.24
Mean z-score -1.52
Structure conservation index 0.17
SVM decision value 0.11
SVM RNA-class probability 0.586241
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3099477 109 - 22224390
AAACCCAUUUGCAAUGGUUCAAAUAUACAAUAGUAUUCAAUUGUAGACGACGCCAGUUGACCUCGAAAACAUAGCAAUCUUUAUU-----------GCUUACCAAAAUUUUUGCAUUCGG
....((...(((((.(((.......((((((........))))))..((((....)))))))..........((((((....)))-----------)))...........)))))...)) ( -17.90)
>DroSec_CAF1 59196 101 - 1
AAACCCAUUUGCAAUGGUCCAAA----AUAUAGUAUUCAUUUG-------------UUGACCUCGAAAACGUAGCAAUUUUUAUGCUCC-GCAAGAGCUUGG-CAAAUUUUUGCAUUUGG
....(((..(((((.........----.....(....)(((((-------------(..(.(((.....((.((((.......)))).)-)...))).)..)-)))))..)))))..))) ( -21.90)
>DroSim_CAF1 59076 102 - 1
AAACCCAUUUGCAAUGGUCCAGA----AUAUAGUAUUCAUUUG-------------UUGACCUCGAAAACGUAGCAAUCUUUAUGCUCCAGCAAGAGUUUGG-AAAAUUUUUGCAUUUGG
....(((..(((((...((((((----(((...))))).((((-------------(((....((....)).((((.......)))).)))))))....)))-)......)))))..))) ( -21.80)
>DroEre_CAF1 59129 114 - 1
AAACCCAUUUGCAAUAGUCCAA-----AUGGAGUAUUCAUUUGUAAGCGAUGGCAGUUGAUCUCGAAAACGUAGCAAUCUUUAUGCUCCAGCAUGGGCUUAG-CAAAUUUUUUAAUUCAG
......((((((...((((((.-----.((((((((....((((..((....)).(((.........)))...)))).....))))))))...))))))..)-)))))............ ( -29.20)
>DroYak_CAF1 63909 111 - 1
AAACCCAUUUGCAAUGUUCCAA-----AUGGAGUAUUCAUUUGUAAACGAAAGCAGUCGACCUCGAAAACGA---AAUCUUUAUACUCCAGCAACAGCUUGC-CAAAUUGUUGCAUUUGG
....(((..((((((.......-----.((((((((...(((((...(....)...(((....)))..))))---)......))))))))((((....))))-......))))))..))) ( -27.30)
>consensus
AAACCCAUUUGCAAUGGUCCAAA____AUAUAGUAUUCAUUUGUA__CGA___CAGUUGACCUCGAAAACGUAGCAAUCUUUAUGCUCCAGCAAGAGCUUGG_CAAAUUUUUGCAUUUGG
....(((..(((((..........................................(((....)))...............((.((((......)))).)).........)))))..))) ( -3.90 =  -5.20 +   1.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:36 2006