Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,094,119 – 3,094,218 |
Length | 99 |
Max. P | 0.678477 |
Location | 3,094,119 – 3,094,218 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.55 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -16.44 |
Energy contribution | -17.00 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -1.87 |
Structure conservation index | 0.62 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3094119 99 + 22224390 ACAGUGCAGAGGGAAAUUUCUUGCUUGCAUUGCA----GCUGUCUGUCAGUAUUUUGCGAAUUUAUUUGUCCAAAUGGCAAAU------GGCAAAAAUUACUUCGGCAA .((((((((.((((....))))..))))))))..----((((...((.(((.((((((.....((((((((.....)))))))------))))))))))))..)))).. ( -26.40) >DroSec_CAF1 56107 95 + 1 ACACUACAGAGGGAAACUUCUGGCUUGCAAUGCA----GCUGUCUGUCAGUAUUUUGCGAAUUUGUUUG--------GCAAAUUACGUCGGCAAUAAUU--UUCGCAAA ......((((((....))))))((.......)).----((((.....))))..((((((((.(((((.(--------((.......)))))))).....--)))))))) ( -27.10) >DroSim_CAF1 51967 99 + 1 ACACUACAGAGGGAAAUUUCUGGCUUGCAAUGCAUAUGACUGCCUGUCAGUAUUUUGCGAAUUUGUUUG--------GCAAAUUACGUCGGCAAUCAUU--UUCGCAAA ......((((((....))))))........(((..((((.((((.(...(((.(((((.((.....)).--------))))).)))..))))).)))).--...))).. ( -25.70) >consensus ACACUACAGAGGGAAAUUUCUGGCUUGCAAUGCA____GCUGUCUGUCAGUAUUUUGCGAAUUUGUUUG________GCAAAUUACGUCGGCAAUAAUU__UUCGCAAA ......((((((....))))))..((((..((((....((((.....))))....))))(((((((...........)))))))......))))............... (-16.44 = -17.00 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:35 2006