Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,089,800 – 3,089,902 |
Length | 102 |
Max. P | 0.853139 |
Location | 3,089,800 – 3,089,902 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 83.21 |
Mean single sequence MFE | -20.91 |
Consensus MFE | -12.74 |
Energy contribution | -12.50 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.20 |
Mean z-score | -1.96 |
Structure conservation index | 0.61 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609763 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3089800 102 + 22224390 UGUUGAAGGGUAUUGAAAAUUUCCAAAAACCAAAGGAGGUCAGAGGAAAUUUCUCUAUCCAUCUGCUAUCCACCCACUUCCGUUCCCC-------CGAUUUUGCCCUUC ....(((((((((((........)))........(((((((((((((..........))).))))..........)))))).......-------......)))))))) ( -22.20) >DroSec_CAF1 52018 100 + 1 ----GCAGGGUAUUGAAAAUUUGCCAAAACCAAAGGAGGUCAGAGGAAAUUUCUCUAUCCAUCUCCAAUCCU-CCACUUCCGUUUCCCC----UCCCACUUUGCCCCUC ----...(((((..(....((((.......))))((((((..(((((.....................))))-).))))))........----.....)..)))))... ( -20.00) >DroSim_CAF1 47849 100 + 1 ----GCAGGGUAUUGAAAAUUUGCCAAAACCAAAGGAGGUCAGAGGAAAUUUCUCUAUCCAUCUCCAAUCCU-CCACUUCCGUUUCCCC----UCCCACUUUGCCCCUC ----...(((((..(....((((.......))))((((((..(((((.....................))))-).))))))........----.....)..)))))... ( -20.00) >DroEre_CAF1 53458 101 + 1 UGUUGAAGGGGAUUGAAAAUUUUCGAAAACCAACGCAGGUCAGAGGAUAUUUCUCUAUCCAUCUCCUAUCCU-CCACUUCCGUUCCC-------CCUACUUUUCUCCCC ......(((((.(((((....))))).....((((.((((..(((((((.................))))))-).)))).)))).))-------)))............ ( -22.63) >DroYak_CAF1 54633 108 + 1 UGUUGAAGGGUAUUGAAAAUUUCCGAAAACCAAAGGAGGUCAGAGGAAAUUUAUCUACCCAUCUCCUAUUCU-CCACUUUCGUGCCCCCAUUUCCCUAUUUUACCCCUC ....((.(((((..((((((((((....(((......)))....)))))))).))))))).)).........-.(((....)))......................... ( -19.70) >consensus UGUUGAAGGGUAUUGAAAAUUUCCCAAAACCAAAGGAGGUCAGAGGAAAUUUCUCUAUCCAUCUCCUAUCCU_CCACUUCCGUUCCCCC_____CCCACUUUGCCCCUC .......(((((..(...................((((((.((((((...))))))....)))))).........((....))...............)..)))))... (-12.74 = -12.50 + -0.24)
Location | 3,089,800 – 3,089,902 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 83.21 |
Mean single sequence MFE | -30.05 |
Consensus MFE | -21.26 |
Energy contribution | -22.10 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.14 |
Mean z-score | -2.07 |
Structure conservation index | 0.71 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3089800 102 - 22224390 GAAGGGCAAAAUCG-------GGGGAACGGAAGUGGGUGGAUAGCAGAUGGAUAGAGAAAUUUCCUCUGACCUCCUUUGGUUUUUGGAAAUUUUCAAUACCCUUCAACA ((((((.(((((((-------(((((((....))....((....((((.(((..((....))))))))).))))))))))))))((((....))))...)))))).... ( -31.80) >DroSec_CAF1 52018 100 - 1 GAGGGGCAAAGUGGGA----GGGGAAACGGAAGUGG-AGGAUUGGAGAUGGAUAGAGAAAUUUCCUCUGACCUCCUUUGGUUUUGGCAAAUUUUCAAUACCCUGC---- .((((......((..(----(.(....)....((.(-((.((..(((..((.(((((.......))))).))..)))..))))).))...))..))...))))..---- ( -27.60) >DroSim_CAF1 47849 100 - 1 GAGGGGCAAAGUGGGA----GGGGAAACGGAAGUGG-AGGAUUGGAGAUGGAUAGAGAAAUUUCCUCUGACCUCCUUUGGUUUUGGCAAAUUUUCAAUACCCUGC---- .((((......((..(----(.(....)....((.(-((.((..(((..((.(((((.......))))).))..)))..))))).))...))..))...))))..---- ( -27.60) >DroEre_CAF1 53458 101 - 1 GGGGAGAAAAGUAGG-------GGGAACGGAAGUGG-AGGAUAGGAGAUGGAUAGAGAAAUAUCCUCUGACCUGCGUUGGUUUUCGAAAAUUUUCAAUCCCCUUCAACA (((((((((((((((-------....((....))((-((((((.................))))))))..))))).(((.....)))...)))))..)))))....... ( -29.53) >DroYak_CAF1 54633 108 - 1 GAGGGGUAAAAUAGGGAAAUGGGGGCACGAAAGUGG-AGAAUAGGAGAUGGGUAGAUAAAUUUCCUCUGACCUCCUUUGGUUUUCGGAAAUUUUCAAUACCCUUCAACA ((((((((......((((((.....(((....)))(-((((((((((.(.((..((......))..)).).)))))...))))))....))))))..)))))))).... ( -33.70) >consensus GAGGGGCAAAGUAGG_____GGGGGAACGGAAGUGG_AGGAUAGGAGAUGGAUAGAGAAAUUUCCUCUGACCUCCUUUGGUUUUCGCAAAUUUUCAAUACCCUUCAACA ((((((................(....)((((((...(((((..(((..((.(((((.......))))).))..)))..))))).....))))))....)))))).... (-21.26 = -22.10 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:34 2006