Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,064,113 – 3,064,217 |
Length | 104 |
Max. P | 0.756031 |
Location | 3,064,113 – 3,064,217 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 97.91 |
Mean single sequence MFE | -26.62 |
Consensus MFE | -25.89 |
Energy contribution | -26.20 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.81 |
Structure conservation index | 0.97 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3064113 104 - 22224390 CAACAAUCGCACUUCAGUCGUCCAUGUGAAUGGAUUCGUUGCUCCAGUUAUUGGAAUGGCAAAAUGAAUUGAUUUAAUUUGUGGCCAAAGUGUCGCCCAUUAAA .......(((((((..((((..((..(((((.(((((((((((((((...)))))...)))..))))))).)))))...))))))..))))).))......... ( -24.00) >DroSec_CAF1 35719 103 - 1 CAACAAUCGCACUUCUGUCAUCCAUGUGAAUGGAUUCGUUGCUCCAGUUAUUG-AAUGGCAAAAUGAAUUGAUUUAAUUUGUGGCCAAAGUGUCGCCCAUUAAA .......(((((((..(((((.....(((((.((((((((...(((.......-..)))...)))))))).)))))....)))))..))))).))......... ( -25.10) >DroEre_CAF1 36478 103 - 1 CAACAAUCGCACUUCAGUCAUCCAUGUGAAUGGAUUCGUUGCUCCAGUUAUUG-AAUGGCAAAAUGAAUUGAUUUAAUUUGUGGCCGAAGUGUCGCCCAUUAAA .......((((((((.(((((.....(((((.((((((((...(((.......-..)))...)))))))).)))))....))))).)))))).))......... ( -28.70) >DroYak_CAF1 37330 103 - 1 CAACAAUCGCACUUCAGUCAUCCAUGUGAAUGGAUUCGUUGCUCCAGUUAUUG-AAUGGCAAAAUGAAUUGAUUUAAUUUGUGGCCGAAGUGUCGCCCAUUAAA .......((((((((.(((((.....(((((.((((((((...(((.......-..)))...)))))))).)))))....))))).)))))).))......... ( -28.70) >consensus CAACAAUCGCACUUCAGUCAUCCAUGUGAAUGGAUUCGUUGCUCCAGUUAUUG_AAUGGCAAAAUGAAUUGAUUUAAUUUGUGGCCAAAGUGUCGCCCAUUAAA .......((((((((.(((((.....(((((.((((((((...(((..........)))...)))))))).)))))....))))).)))))).))......... (-25.89 = -26.20 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:26 2006