Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,063,271 – 3,063,383 |
Length | 112 |
Max. P | 0.586402 |
Location | 3,063,271 – 3,063,383 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 93.93 |
Mean single sequence MFE | -32.62 |
Consensus MFE | -29.04 |
Energy contribution | -29.29 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.09 |
Mean z-score | -1.47 |
Structure conservation index | 0.89 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3063271 112 + 22224390 GUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCA-AACUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGCUGACGGCUGCGACACUCGAUAGCG (((.(((((((....))..(((.(.((((((.((((-(.........(((((((....)))))))....))))).)))))))))))))))))).((((((.....)).)))). ( -36.22) >DroSec_CAF1 34934 112 + 1 GUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCA-AACUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGAUGACGGCUGCGACACUCGAUAGCG (((..((((((....))....))))((((((.((((-(.........(((((((....)))))))....))))).)))))).........))).((((((.....)).)))). ( -32.62) >DroEre_CAF1 35641 113 + 1 CUCUAGCUUGCGAAAGUUUUCGAGCUCUGUUUUCCAAAACUUUCAAAUUGCUGUCAUCACAGCAGGAUAUUGGGCAGCGGACCGAAAUCUGACGGCUGCGACACUCGAUAGCG .........(((((((((((.(((.......))).)))))))))...(((((((....)))))))..(((((((..((((.(((........)))))))....))))))))). ( -34.10) >DroYak_CAF1 36512 112 + 1 GUCUAGCUUGCGAAAGUUUUCGAGCUCUGUUUUCCA-AACUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGGCAGCGUACCGAAAUCUGACGGCUGCGACACUUAAUAGCG ((((((((.((....))(((((.((.((((...(((-(.........(((((((....)))))))....)))))))).))..)))))......))))).)))........... ( -27.52) >consensus GUCUAGCUUGCGAAAGUUUUCGAGCUCUGUUUUCCA_AACUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGCUGACGGCUGCGACACUCGAUAGCG (((((((...((..((((((((.(.((((((.((((...........(((((((....))))))).....)))).)))))))))))))))..)))))).)))........... (-29.04 = -29.29 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:25 2006