Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,060,767 – 3,060,859 |
Length | 92 |
Max. P | 0.898690 |
Location | 3,060,767 – 3,060,859 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 95.01 |
Mean single sequence MFE | -17.74 |
Consensus MFE | -15.98 |
Energy contribution | -17.50 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.08 |
Mean z-score | -1.43 |
Structure conservation index | 0.90 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3060767 92 + 22224390 AUAAUUGUCGGCAAUUUGUGCCAGAAUAAAAAAAACGAAUAGAGAAAUCAUCGGGAAUUAUUGCUCUAUUAAUAUUUUGACAGACGCACAUU ((((((.((((((.....))))...................((....))...)).))))))((((((.((((....)))).))).))).... ( -17.00) >DroSec_CAF1 32537 89 + 1 AUAAUUGUCGGCAAUUUGUGCCAGAAUAA---AAACGAAUAGAGAAAUCAUCGGGAAUUAUUGCUCUAUUAAUAUUUUGACAGACGCACAUU ((((((.((((((.....)))).......---.........((....))...)).))))))((((((.((((....)))).))).))).... ( -17.00) >DroSim_CAF1 34938 89 + 1 AUAAUUGUCGGCAAUUUGUGCCAGAAUAA---AAACGAAUAGAGAAAUCAUCGGGAAUUAUUGCUCUAUUAAUAUUUUGACAGACGCACACU ((((((.((((((.....)))).......---.........((....))...)).))))))((((((.((((....)))).))).))).... ( -17.00) >DroEre_CAF1 33157 89 + 1 AUAAUUGUCGGCAAUUUGUGCCAGAAUAA---AAACGAAUAGAGAAAUCAUUGGGAAUUAUGGCUCUAUUAAUAUUUUGACAGACGCCUUUU ((((((.((((((.....)))).......---.........((....))...)).))))))((((((.((((....)))).))).))).... ( -19.50) >DroYak_CAF1 33928 89 + 1 AUAAUUGUCGGCAAUUUGUGCCAGAAUAA---AAACGAAUAGAGAAAUCAUUGGGAAUUAUUGCUCUAUUAAUAUUUUGACGGACGCAAAUU .(((((.((((((.....)))).......---.........((....))...)).)))))((((((..((((....))))..)).))))... ( -18.20) >consensus AUAAUUGUCGGCAAUUUGUGCCAGAAUAA___AAACGAAUAGAGAAAUCAUCGGGAAUUAUUGCUCUAUUAAUAUUUUGACAGACGCACAUU ((((((.((((((.....))))...................((....))...)).))))))((((((.((((....)))).))).))).... (-15.98 = -17.50 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:24 2006