Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,054,156 – 3,054,251 |
Length | 95 |
Max. P | 0.641123 |
Location | 3,054,156 – 3,054,251 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 80.58 |
Mean single sequence MFE | -19.32 |
Consensus MFE | -8.05 |
Energy contribution | -7.81 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.08 |
Mean z-score | -2.21 |
Structure conservation index | 0.42 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3054156 95 + 22224390 ACUCGAACAUCCAAUUAGGUGUGACCAA-AUGUAUGUAUCUACGAAUCGUACGAACUU----AUAUAUAUGUAUAUAUCAGGCUUUUAUAUACACUCCAA--- .................((.((......-(((((((((((((((...)))).))...)----))))))))(((((((.........))))))))).))..--- ( -15.10) >DroSec_CAF1 26109 87 + 1 UCUUGAACACCCAAUUAGGUGUGACCAAAACGUAUGUAUCUAAG---CGUACGAAUUG----AUAUACAUA----UAUCAGG--UUUAUAUACACUCCAA--- ......(((((......)))))((((....(((((((......)---))))))...((----((((....)----)))))))--))..............--- ( -21.10) >DroSim_CAF1 28522 89 + 1 ACUCGAACACCCAAUUAGGUGUGACCAAAACGUAUGUAUCUAGG---CGUACGAAUUG----AUAUACAUAUA--UAUAAGG--UUUAUAUACACUCCAA--- ......(((((......)))))((((....(((((((......)---)))))).....----(((((....))--)))..))--))..............--- ( -17.70) >DroEre_CAF1 26633 93 + 1 ACUCGAACAUCGAGUUAGGUGUGACCAA-ACGUAUGUAUCUAGG---UGUAUCCAUUUACAUAUAUACAUA----UAUCAUG--UUUAUAUACACUGAAAGUG (((((.....)))))..((((((...((-((((((((((.((.(---((((......)))))...)).)))----))).)))--)))...))))))....... ( -22.50) >DroYak_CAF1 26943 86 + 1 GCUCGAACAUCGAAUUAGGUGUGACUAA-ACGUAUGUAACUAGG---UGUACGCAUUU----AUAUACAUA----UAUCAUG--GUUAUAUACACUCAAA--- ....(((((((......)))))......-..(((((((((((((---((((.(.((..----..)).).))----)))).))--)))))))))..))...--- ( -20.20) >consensus ACUCGAACAUCCAAUUAGGUGUGACCAA_ACGUAUGUAUCUAGG___CGUACGAAUUU____AUAUACAUA____UAUCAGG__UUUAUAUACACUCCAA___ ......(((((......))))).........(((((((................................................))))))).......... ( -8.05 = -7.81 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:21 2006