Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,051,050 – 3,051,144 |
Length | 94 |
Max. P | 0.987835 |
Location | 3,051,050 – 3,051,144 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 77.50 |
Mean single sequence MFE | -15.34 |
Consensus MFE | -13.25 |
Energy contribution | -13.25 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.86 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.987835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3051050 94 - 22224390 CUCUAUAAUUUCUCCUCGCUCCUUCAUCCACUUUCUUUUUGGAGGGUGCGGUGUAAUGUUGCCCUCCAUAUUACCUCAACUUCAUCUGUUCCAG .............((.(((.((((((.............))))))))).)).(((((((........))))))).................... ( -15.22) >DroEre_CAF1 23599 71 - 1 CUCUAUAAUUU-----------------------CUUUUUGGAGGGUUUGCUGUAAUGUUGCCCUCCAUAUUACCUCAACUUCAUCUGUUCCAG ...........-----------------------.....((((((((..((......)).)))))))).......................... ( -15.70) >DroYak_CAF1 23835 92 - 1 CACUAUAAUUUCUCUCCGU--UUUCACCCACUUUCUUUUUGGAGGGUGUGGCGUAAAGUUGCCCUCCAUAUUACCUCAACUUCAUCUGUUCCAG ...................--..................((((((((..(((.....))))))))))).......................... ( -15.10) >consensus CUCUAUAAUUUCUC__CG____UUCA_CCACUUUCUUUUUGGAGGGUGUGGUGUAAUGUUGCCCUCCAUAUUACCUCAACUUCAUCUGUUCCAG .......................................((((((((.............)))))))).......................... (-13.25 = -13.25 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:20 2006