Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,032,675 – 3,032,776 |
Length | 101 |
Max. P | 0.928509 |
Location | 3,032,675 – 3,032,776 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -37.80 |
Consensus MFE | -27.09 |
Energy contribution | -27.82 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.20 |
Mean z-score | -2.86 |
Structure conservation index | 0.72 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3032675 101 - 22224390 CAAAAAAUAAA-ACAAA---------ACUU------AAAUCGCGGCAUUAGCGCGUGCGAGCGAGAUGGCGCGUUGGCACGCGUGUUUACCGUUGGAC---GCGUGUGCCGCUAUUACCG ...........-.....---------....------......(((...((((((((((.(......).)))))).((((((((((((((....)))))---)))))))))))))...))) ( -39.40) >DroSec_CAF1 12729 101 - 1 CAAAAAAUAAA-ACAAA---------ACUU------AAAUCGCGGCAUUAGCGCGUGCGAGCGAGAUGGCGCGUUGGCACGCGUGUUUACCGUUGGAC---GCGUGUGCCGCUAUUACCG ...........-.....---------....------......(((...((((((((((.(......).)))))).((((((((((((((....)))))---)))))))))))))...))) ( -39.40) >DroSim_CAF1 7715 101 - 1 CAAAAAAUAAA-ACAAA---------ACUU------AAAUCGCGGCAUACGCGCGUGCGAGCGAGAUGGCGCGUUGGCACGCGUGUUUACCGUUGGAC---GCGUGUGCCGCUAUUACCG ...........-.....---------....------.....(((((((((((((((((.((((.(....).)))).))))))..(((((....)))))---)))))))))))........ ( -43.00) >DroEre_CAF1 12746 101 - 1 CAAAAAAUAAA-ACAAA---------ACUU------AAAUCGCGGCAUUAGCGCGUGCGAGCGAGAUGGCGCGUAGGCACGCGUGUUUACCGUUGAAC---GCGUGUGCCGCUAUUACCG ...........-.....---------....------......(((...((((((((((.(......).)))))).((((((((((((((....)))))---)))))))))))))...))) ( -40.60) >DroYak_CAF1 13159 109 - 1 CAAAAAAUAAA-ACAAAACUUCA-AAACUU------AAAUCGCGGCAUUAGCGCGUGCGAGCGAGAUGGCGCGUUUGCACGCGUGUUUACAGUUGGAC---GCGUAUGCCGCUAUUACCG ...........-...........-......------.....(((((((..(((((((((((((.(....).)))))))))))(((((((....)))))---)))))))))))........ ( -38.30) >DroAna_CAF1 6024 111 - 1 CAAAAAAAAAGUAUAAGAUUUAUGAAAUUUAUUAUGAAGACGCGGCUUUGUGGCGUGCGAGCGAGAUGGC--GAUGCCGCGUAUGUUUACCGUUAGACCGUACGAACGCC-------CCG ..................(((((((......)))))))..((.(((...(((((((((.(......).))--.)))))))(((((((((....)))).)))))....)))-------.)) ( -26.10) >consensus CAAAAAAUAAA_ACAAA_________ACUU______AAAUCGCGGCAUUAGCGCGUGCGAGCGAGAUGGCGCGUUGGCACGCGUGUUUACCGUUGGAC___GCGUGUGCCGCUAUUACCG .........................................(((((((..((((((((.((((.(....).)))).))))))))(((((....))))).......)))))))........ (-27.09 = -27.82 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:20 2006