Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,027,613 – 3,027,733 |
Length | 120 |
Max. P | 0.647723 |
Location | 3,027,613 – 3,027,733 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.24 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -22.02 |
Energy contribution | -22.18 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.17 |
Structure conservation index | 0.93 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3027613 120 - 22224390 GAAUUCGAUAAAAAAAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCACUUACAACUACAAAUUGUCCCACAAACGUUUAAUCGAUCCAAUCAGAAUUUGCGCUAAGUUUAGUU ..............((((((((((((.(((..(((...((((((......))))))........................((......))..)))...)))...)))))))))))).... ( -24.60) >DroSec_CAF1 7990 115 - 1 GAAUUCGAUAA---AAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCGCUUACAACUACAAA-UGUCCCACAAACGUAUAAUCGAUC-AAUCAGAAUUUGCGCUAAGUUUAGUU ...........---(((((((((((((((....)))....((((....((((((.(((....(((...-((.....))...)))))).)))))-))))).....)))))))))))).... ( -24.50) >DroSim_CAF1 2962 115 - 1 GAAUUCGAUAA---AAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCGCUUACAACUACAAA-UGUCCCACAAACGUAUAAUCGAUC-AAUCAGAAUUUGCGCUAAGUUUAGUU ...........---(((((((((((((((....)))....((((....((((((.(((....(((...-((.....))...)))))).)))))-))))).....)))))))))))).... ( -24.50) >DroEre_CAF1 8024 115 - 1 GAAUUCGAUAA---AAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCACUUACAACUACAAA-UGCCCCACAAACGUUUAAUCGAUC-AAUCAGAAUUUGCGCUAAGUGUAGUU ...........---..((((((((((.(((.(((((..((((((......))))))............-.))).......((......))...-.)).)))...))))))))))...... ( -22.26) >DroYak_CAF1 8000 115 - 1 GAAUUCGAUAA---AAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCACUUACAACUACAAA-UGCCCCACAAACGUUUAAUCGAUC-AAUCAGAAUUUGCGCUAAGUGUAGUU ...........---..((((((((((.(((.(((((..((((((......))))))............-.))).......((......))...-.)).)))...))))))))))...... ( -22.26) >consensus GAAUUCGAUAA___AAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCACUUACAACUACAAA_UGUCCCACAAACGUUUAAUCGAUC_AAUCAGAAUUUGCGCUAAGUUUAGUU ..............((((((((((((.(((..((....((((((......))))))..))....................((......))........)))...)))))))))))).... (-22.02 = -22.18 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:19 2006