Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,025,225 – 3,025,345 |
Length | 120 |
Max. P | 0.996812 |
Location | 3,025,225 – 3,025,345 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.75 |
Mean single sequence MFE | -48.92 |
Consensus MFE | -43.64 |
Energy contribution | -43.48 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -2.05 |
Structure conservation index | 0.89 |
SVM decision value | 2.75 |
SVM RNA-class probability | 0.996812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3025225 120 + 22224390 AGCAUGACACCGCAGGCAAUGAUCGGAUCCCCGCCGCCGGGUCAACAGCAGCCGCAGUUGAUCACACAGCCGACGGUCAUUUCCGCCGGAAAUGGUGGCAACAAUGGCAAUGGCAAUGCC .((((....(((..(.((.((...((....))((((((((((((((.((....)).)))))))......(((.(((......))).)))...)))))))..)).)).)..)))..)))). ( -42.80) >DroSec_CAF1 5644 120 + 1 AGCAUGACACCGCAGGCCAUGAUCGGAUCCCCGCCGCCGGGUCAGCAGCAGCCGCAGCUGAUCACACAGCCGACGGUCAUUUCCGCCGGAAACGGCGGCAACAAUGGCAACGGCAACGCC .((........))..(((((....((....))((((((((((((((.((....)).)))))))......(((.(((......))).)))...)))))))....)))))..((....)).. ( -51.10) >DroSim_CAF1 625 120 + 1 AGCAUGACGCCGCAGGCCAUGAUCGGAUCCCCGCCGCCGGGUCAGCAGCAGCCGCAGCUGAUCACACAGCCGACGGUCAUUUCCGCCGGAAACGGCGGCAACAAUGGCAACGGCAACGCC ........((((...(((((....((....))((((((((((((((.((....)).)))))))......(((.(((......))).)))...)))))))....)))))..))))...... ( -55.50) >DroEre_CAF1 5662 120 + 1 AGCAUGACACCGCAGGCCAUGAUCGGAUCCCCGCCGCCGGGCCAACAGCAGCCGCAGUUGAUCACCCAGCCGACGGUCAUAUCCGCUGGAAACGGUGGCAACAAUGGCAACGGCAAUGCC .((((....(((...(((((....((....))((((((((..((((.((....)).))))..)..(((((.((........)).)))))...)))))))....)))))..)))..)))). ( -47.50) >DroYak_CAF1 5590 120 + 1 AGCAUGACACCGCAGGCGAUGAUCGGUUCACCGCCGCCUGGCCAGCAGCAGCCGCAGCUGAUCACCCAGCCGACGGUCAUAUCCGCCGGCAAUGGCGGCAAUAAUGGCAACGGCAACGCC .((........)).((((.((.((((....))((((((((..((((.((....)).))))..))....((((.(((......))).))))...))))))......(....))))).)))) ( -47.70) >consensus AGCAUGACACCGCAGGCCAUGAUCGGAUCCCCGCCGCCGGGUCAGCAGCAGCCGCAGCUGAUCACACAGCCGACGGUCAUUUCCGCCGGAAACGGCGGCAACAAUGGCAACGGCAACGCC .((......(((...(((((....((....))((((((((((((((.((....)).)))))))......(((.(((......))).)))...)))))))....)))))..)))....)). (-43.64 = -43.48 + -0.16)
Location | 3,025,225 – 3,025,345 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.75 |
Mean single sequence MFE | -56.28 |
Consensus MFE | -48.88 |
Energy contribution | -48.80 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.71 |
Structure conservation index | 0.87 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3025225 120 - 22224390 GGCAUUGCCAUUGCCAUUGUUGCCACCAUUUCCGGCGGAAAUGACCGUCGGCUGUGUGAUCAACUGCGGCUGCUGUUGACCCGGCGGCGGGGAUCCGAUCAUUGCCUGCGGUGUCAUGCU ((((.......))))......((...(((((((...)))))))(((((.(((...((((((.......(((((((......)))))))((....)))))))).))).))))).....)). ( -46.30) >DroSec_CAF1 5644 120 - 1 GGCGUUGCCGUUGCCAUUGUUGCCGCCGUUUCCGGCGGAAAUGACCGUCGGCUGUGUGAUCAGCUGCGGCUGCUGCUGACCCGGCGGCGGGGAUCCGAUCAUGGCCUGCGGUGUCAUGCU (((((((((((.(((((.((((((((((..((.(((((....(.(((.((((((......))))))))))..)))))))..)))))))((....))))).)))))..))))))..))))) ( -59.20) >DroSim_CAF1 625 120 - 1 GGCGUUGCCGUUGCCAUUGUUGCCGCCGUUUCCGGCGGAAAUGACCGUCGGCUGUGUGAUCAGCUGCGGCUGCUGCUGACCCGGCGGCGGGGAUCCGAUCAUGGCCUGCGGCGUCAUGCU (((((((((((.(((((.((((((((((..((.(((((....(.(((.((((((......))))))))))..)))))))..)))))))((....))))).)))))..))))))..))))) ( -61.80) >DroEre_CAF1 5662 120 - 1 GGCAUUGCCGUUGCCAUUGUUGCCACCGUUUCCAGCGGAUAUGACCGUCGGCUGGGUGAUCAACUGCGGCUGCUGUUGGCCCGGCGGCGGGGAUCCGAUCAUGGCCUGCGGUGUCAUGCU ((((.......))))...((((.((((((..(((.(((((....((((((.((((((...((((.((....)).))))))))))))))))..)))))....)))...)))))).)).)). ( -53.70) >DroYak_CAF1 5590 120 - 1 GGCGUUGCCGUUGCCAUUAUUGCCGCCAUUGCCGGCGGAUAUGACCGUCGGCUGGGUGAUCAGCUGCGGCUGCUGCUGGCCAGGCGGCGGUGAACCGAUCAUCGCCUGCGGUGUCAUGCU ((((.......)))).(((((((((((...((((((((....(.(((.(((((((....)))))))))))..))))))))..)))))))))))...((.(((((....)))))))..... ( -60.40) >consensus GGCGUUGCCGUUGCCAUUGUUGCCGCCGUUUCCGGCGGAAAUGACCGUCGGCUGUGUGAUCAGCUGCGGCUGCUGCUGACCCGGCGGCGGGGAUCCGAUCAUGGCCUGCGGUGUCAUGCU (((((((((((.(((((.(((((((((....(((((((......)))))))........(((((.((....)).)))))...))))))((....))))).)))))..))))))..))))) (-48.88 = -48.80 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:09 2006