Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,024,185 – 3,024,345 |
Length | 160 |
Max. P | 0.958118 |
Location | 3,024,185 – 3,024,305 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -50.08 |
Consensus MFE | -42.35 |
Energy contribution | -42.73 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.15 |
Mean z-score | -1.41 |
Structure conservation index | 0.85 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3024185 120 - 22224390 CGGAAACGGGAUCACUGCGCUGUCGCUUGGGCAACGGCAUAUCCGAUUCAUCGUCGGACCAAUGAGCACCUGGCUGGCCAACACCCUGCGAUUGCAUGGCCACCUGCUUGUUGAGAUUCC .(....)((((((.....(((((.((....)).)))))...((((((.....)))))).(((..((((...((.((((((......(((....)))))))))))))))..))).)))))) ( -47.20) >DroSec_CAF1 4604 120 - 1 CGGAAACGGGAUCGCUGCGCUGGCGCUUGGGCAACGGCAUAUCCGAUUCAUCGUCGGACCAAUGAGCACCCGGCUGGCCAACACCUUGCGACUGCAGGGCCACCUGCUUGUUGAGGUUCC .(....)((((((((((.(((((.((((((((....))...((((((.....)))))))))...)))..)))))))))..........((((.(((((....)))))..)))).)))))) ( -45.20) >DroEre_CAF1 4622 120 - 1 CGGAAACGGGAUCACUGCGCUGCCGCUUGGGCAGCGGCAUAUCCGAUUCAUCGUCGGACCAAUGGGCACCCGGCUGGCCGACACCCUGCGACUGCAGGGCCACCUGUUUGUUGAGGUUAC ((....))((((...(((((((((.....)))))).))).))))........(((((.(((.(((....)))..))))))))..(((.((((.(((((....)))))..))))))).... ( -54.10) >DroYak_CAF1 4550 120 - 1 CGGAAACGGGAUCACUGCGCUGCCUUUUGGGCAGCGGCAUAUCCGAUUCAUCGUCGGACCAAUGGGCGCCCGGCUGGCCGACUCCCUGCGACUGCAGGGCCACCUGUUUGUUGAGGUUGC ((....))((((...(((((((((.....)))))).))).))))........(((((.(((.(((....)))..))))))))..(((.((((.(((((....)))))..))))))).... ( -53.80) >consensus CGGAAACGGGAUCACUGCGCUGCCGCUUGGGCAACGGCAUAUCCGAUUCAUCGUCGGACCAAUGAGCACCCGGCUGGCCAACACCCUGCGACUGCAGGGCCACCUGCUUGUUGAGGUUCC .(....)((((((..(((((((((.....)))))).)))..((((((.....)))))).(((..((((...((.(((((......((((....)))))))))))))))..))).)))))) (-42.35 = -42.73 + 0.38)
Location | 3,024,225 – 3,024,345 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -50.08 |
Consensus MFE | -44.94 |
Energy contribution | -44.75 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -2.24 |
Structure conservation index | 0.90 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3024225 120 - 22224390 UGAUCACUGGCAUAGCCACCAUUGUUGCCCAGACCGACACCGGAAACGGGAUCACUGCGCUGUCGCUUGGGCAACGGCAUAUCCGAUUCAUCGUCGGACCAAUGAGCACCUGGCUGGCCA ........(((.((((((.....(((((((((...((..(((....)))..))...(((....))))))))))))((....((((((.....))))))))..........))))))))). ( -49.00) >DroSec_CAF1 4644 120 - 1 UGAUCACUGGCGUAGCCACCAUUGUUGCCCAGACCCACACCGGAAACGGGAUCGCUGCGCUGGCGCUUGGGCAACGGCAUAUCCGAUUCAUCGUCGGACCAAUGAGCACCCGGCUGGCCA ........(((.(((((......(((((((((.......(((....))).......(((....))))))))))))((....((((((.....))))))))...........)))))))). ( -48.00) >DroEre_CAF1 4662 120 - 1 UGAUCACUGGCAUAGCCACCAUUGUUGCCCAGGCCCACACCGGAAACGGGAUCACUGCGCUGCCGCUUGGGCAGCGGCAUAUCCGAUUCAUCGUCGGACCAAUGGGCACCCGGCUGGCCG ........(((.(((((((....))((((((.(((....(((....))).........((((((.....)))))))))...((((((.....))))))....))))))...)))))))). ( -52.80) >DroYak_CAF1 4590 120 - 1 UGAUCACUGGCAUAGCCACCAUUGUUGCCCAGACCCACGCCGGAAACGGGAUCACUGCGCUGCCUUUUGGGCAGCGGCAUAUCCGAUUCAUCGUCGGACCAAUGGGCGCCCGGCUGGCCG ........(((.(((((.((((((.((((..........(((....))).........((((((.....))))))))))..((((((.....)))))).))))))......)))))))). ( -50.50) >consensus UGAUCACUGGCAUAGCCACCAUUGUUGCCCAGACCCACACCGGAAACGGGAUCACUGCGCUGCCGCUUGGGCAACGGCAUAUCCGAUUCAUCGUCGGACCAAUGAGCACCCGGCUGGCCA ........(((.(((((......(((((((((.......(((....))).......(((....))))))))))))((....((((((.....))))))))...........)))))))). (-44.94 = -44.75 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:07 2006