Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 424,939 – 425,038 |
Length | 99 |
Max. P | 0.807366 |
Location | 424,939 – 425,038 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.08 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -12.50 |
Energy contribution | -12.58 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.17 |
Mean z-score | -2.06 |
Structure conservation index | 0.50 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807366 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 424939 99 - 22224390 AUUUGAAAAGCACGUAAAAAGGCAUGCACUGUGUGCCACACAUAUUAUUGUUACAAUAUUCGUACGAUCAUUUGUUGAGCUUAUGUGUUGUU------------------UUUUAAU ..((((((((((........(((((((...)))))))(((((((.....(((.(((((.((....)).....)))))))).)))))))))))------------------)))))). ( -25.10) >DroSec_CAF1 27368 99 - 1 AUUUGCACAGCACGUAAAGUGGCAUGCACUGUGUGCCGCACAUAUUAUUGUUACAAUAUUCGCACGAUCAUUUGUUGAGUUUCUGUGUUGUU------------------UUUUAAU ......((((((((((..(((((((((...)))))))))(((......))))))...(((((.((((....)))))))))....))))))).------------------....... ( -26.00) >DroSim_CAF1 7857 99 - 1 AUUUGCACAGCACGUAAAGUGGCAUGCACUGUGUGCCACACAUAUUAUUGUUACAAUAUUCGCACGAUCAUUUGUUGAGUUUCUGUAUUGUU------------------UUUUAAU .(((((.......)))))(((((((((...)))))))))............((((..(((((.((((....)))))))))...)))).....------------------....... ( -21.00) >DroEre_CAF1 29026 96 - 1 AUUUGAACAGCACGUAAAGUGGCAUGCACUGUGUGCCAC--AGAUGACUGCUACAA-AUUCGCACGAUCACUUGCCCAGUUUCUGCGUUCUGC------------------UUUAAU ..((((((((.((((...(((((((((...)))))))))--(((.(((((...(((-..((....))....)))..)))))))))))).))).------------------))))). ( -27.00) >DroYak_CAF1 24133 115 - 1 AUUUGAGCAGCGCACAAUGUGGCAUGCACCGUGUGCCAC--AAAUUACUGUUGCAAUAUUCGCACGAUCAUUUGCCGAGUUCCUUUUUUCCCCUUUUUUUCACUGCUGUUUUUUAAU ....((((((((((((.((((((((((...)))))))))--)......)).)))...(((((((........)).)))))........................)))))))...... ( -26.80) >consensus AUUUGAACAGCACGUAAAGUGGCAUGCACUGUGUGCCACACAUAUUAUUGUUACAAUAUUCGCACGAUCAUUUGUUGAGUUUCUGUGUUGUU__________________UUUUAAU ........(((.......(((((((((...))))))))).............((((...((....))....))))...))).................................... (-12.50 = -12.58 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:25 2006