Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,023,825 – 3,023,985 |
Length | 160 |
Max. P | 0.593636 |
Location | 3,023,825 – 3,023,945 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.25 |
Mean single sequence MFE | -39.72 |
Consensus MFE | -35.85 |
Energy contribution | -35.85 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.37 |
Structure conservation index | 0.90 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3023825 120 + 22224390 GCAUUCAAAUCUAUUUGGAGAUUGACAAUCGCAAAUGCACCGAAUGCUUUACGCACGCCGUUGAGGCAGCCGAAUUUCUGGCUGCCACGGCGGCCAAACAUCAGCUGCGGAACGAUUUUC ................((((((((......((....)).(((...(((........(((((((.((((((((......)))))))).)))))))........)))..)))..)))))))) ( -42.89) >DroSec_CAF1 4244 120 + 1 GCAUUCAAAUCUAUUUGGAGAUUGACAAUCGCAAGUGCACCGAGUGCUUCACCCACGCCGUGGAGGCGGCCGAGUUCCUGGCUGCCACGGCGGCCAAACAUCAGCUGAGGAACGACUUCC ((((((.(((((......))))).......((....))...)))))).........(((((.(.((((((((......)))))))).).)))))............((((.....)))). ( -40.40) >DroEre_CAF1 4262 120 + 1 GCAUACAAAUCUAUCUGGAGAUUGAUAACCGCAAGUGCACCGAGUGCUUCACACACGCCGUGGAGGCAGCCGAAUUUCUGGCUGCCACGGCGGCCAAACAUCAGCUGAGGAACGACUUUC .............(((..((.(((((....(.(((..(.....)..))))......(((((.(.((((((((......)))))))).).))))).....)))))))..)))......... ( -38.70) >DroYak_CAF1 4190 120 + 1 GCAUACAAAUCUAUCUGGAGAUUGACAAUCGCAAGUGCACCGAAUGCUUCACCCACGCAGUGGAGGCGGCCGAAUUCCUGGCUGCCACGGCAGCCAAACAUCAGCUGCGGAAUGACUUCC (((....(((((......)))))......(....)))).((.....((((((.......))))))(((((.((.....(((((((....)))))))....)).))))))).......... ( -36.90) >consensus GCAUACAAAUCUAUCUGGAGAUUGACAAUCGCAAGUGCACCGAAUGCUUCACCCACGCCGUGGAGGCAGCCGAAUUCCUGGCUGCCACGGCGGCCAAACAUCAGCUGAGGAACGACUUCC ((((((.(((((......))))).......((....))...)))))).........(((((.(.((((((((......)))))))).).)))))..............((((....)))) (-35.85 = -35.85 + 0.00)
Location | 3,023,825 – 3,023,945 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.25 |
Mean single sequence MFE | -43.77 |
Consensus MFE | -38.21 |
Energy contribution | -38.40 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.11 |
Mean z-score | -1.40 |
Structure conservation index | 0.87 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3023825 120 - 22224390 GAAAAUCGUUCCGCAGCUGAUGUUUGGCCGCCGUGGCAGCCAGAAAUUCGGCUGCCUCAACGGCGUGCGUAAAGCAUUCGGUGCAUUUGCGAUUGUCAAUCUCCAAAUAGAUUUGAAUGC ((.((((((...(((.(.(((((((.(((((((((((((((........)))))))...)))))).))...))))))).).)))....)))))).))(((((......)))))....... ( -48.00) >DroSec_CAF1 4244 120 - 1 GGAAGUCGUUCCUCAGCUGAUGUUUGGCCGCCGUGGCAGCCAGGAACUCGGCCGCCUCCACGGCGUGGGUGAAGCACUCGGUGCACUUGCGAUUGUCAAUCUCCAAAUAGAUUUGAAUGC ...((((((......((((((((((.(((((((((((.(((........))).)))...)))))...))).))))).)))))......)))))).(((((((......))).)))).... ( -41.10) >DroEre_CAF1 4262 120 - 1 GAAAGUCGUUCCUCAGCUGAUGUUUGGCCGCCGUGGCAGCCAGAAAUUCGGCUGCCUCCACGGCGUGUGUGAAGCACUCGGUGCACUUGCGGUUAUCAAUCUCCAGAUAGAUUUGUAUGC ((.(..(((......((((((((((.(((((((((((((((........)))))))...))))))...)).))))).)))))......)))..).))(((((......)))))....... ( -43.10) >DroYak_CAF1 4190 120 - 1 GGAAGUCAUUCCGCAGCUGAUGUUUGGCUGCCGUGGCAGCCAGGAAUUCGGCCGCCUCCACUGCGUGGGUGAAGCAUUCGGUGCACUUGCGAUUGUCAAUCUCCAGAUAGAUUUGUAUGC ((((....))))(((.(.(((((((((((((....))))))))...((((.(((((......).)))).))))))))).).)))...(((((..(((.(((....))).))))))))... ( -42.90) >consensus GAAAGUCGUUCCGCAGCUGAUGUUUGGCCGCCGUGGCAGCCAGAAAUUCGGCCGCCUCCACGGCGUGGGUGAAGCACUCGGUGCACUUGCGAUUGUCAAUCUCCAAAUAGAUUUGAAUGC ((.((((((......((((((((((.(((((((((((((((........)))))))...))))))...)).))))).)))))......)))))).))(((((......)))))....... (-38.21 = -38.40 + 0.19)
Location | 3,023,865 – 3,023,985 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.42 |
Mean single sequence MFE | -44.85 |
Consensus MFE | -36.59 |
Energy contribution | -36.52 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.21 |
Mean z-score | -1.39 |
Structure conservation index | 0.82 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3023865 120 + 22224390 CGAAUGCUUUACGCACGCCGUUGAGGCAGCCGAAUUUCUGGCUGCCACGGCGGCCAAACAUCAGCUGCGGAACGAUUUUCAGAUACACAGUGUUAGGGGCAUCAAGAAUCCCGGCGAUGA ....(((.....))).(((((((.((((((((......)))))))).)))))))....((((.((((.(((..((((..(.(((((...))))).)..).))).....))))))))))). ( -47.00) >DroSec_CAF1 4284 120 + 1 CGAGUGCUUCACCCACGCCGUGGAGGCGGCCGAGUUCCUGGCUGCCACGGCGGCCAAACAUCAGCUGAGGAACGACUUCCAGAUACACAGUGUGCGGGGCAUCAAGAAUCCCGGCGAUGA ...(((.......)))(((((.(.((((((((......)))))))).).)))))....((((.((((.(((..((..(((.(.(((.....)))).)))..)).....))))))))))). ( -43.90) >DroEre_CAF1 4302 120 + 1 CGAGUGCUUCACACACGCCGUGGAGGCAGCCGAAUUUCUGGCUGCCACGGCGGCCAAACAUCAGCUGAGGAACGACUUUCAGAUACACAGCGUGCGGGGCAUCAAGAAUCCCGGCGAUGA ...(((.....)))..(((((.(.((((((((......)))))))).).)))))....((((.((((.(...(........)...).))))..((.(((.((.....))))).)))))). ( -45.90) >DroYak_CAF1 4230 120 + 1 CGAAUGCUUCACCCACGCAGUGGAGGCGGCCGAAUUCCUGGCUGCCACGGCAGCCAAACAUCAGCUGCGGAAUGACUUCCAGAUACACAGCGUUCGUGGUAUUAAGAAUCCCGGCGACGA ..(((((..(((..((((.(((...(((((.((.....(((((((....)))))))....)).)))))((((....)))).....))).))))..))))))))........((....)). ( -42.60) >consensus CGAAUGCUUCACCCACGCCGUGGAGGCAGCCGAAUUCCUGGCUGCCACGGCGGCCAAACAUCAGCUGAGGAACGACUUCCAGAUACACAGCGUGCGGGGCAUCAAGAAUCCCGGCGAUGA ...(((((((...(((((.(((...(((((.((.....(((((((....)))))))....)).)))))((((....)))).....))).))))).))))))).................. (-36.59 = -36.52 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:05 2006