Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,021,284 – 3,021,404 |
Length | 120 |
Max. P | 0.708040 |
Location | 3,021,284 – 3,021,404 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.64 |
Mean single sequence MFE | -45.55 |
Consensus MFE | -39.96 |
Energy contribution | -39.40 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.14 |
Mean z-score | -1.57 |
Structure conservation index | 0.88 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3021284 120 - 22224390 UGCUGGCGCAGGGAUCCAUUUUGCUUUCACAAUCCCUGCCCGUGAAGGGCACUUUGCAGACGCACUUGUAGCCGUUGACCUUGUCAAUGCAGGUGCCUCCAUUUCCGCACGGAUUGGUCA ....((.((((((((................))))))))))(..(((....)))..).(((((((((((....((((((...))))))))))))))...((..(((....))).))))). ( -42.59) >DroSec_CAF1 1703 120 - 1 UGCUGGCGCAGGGAUCCAUCUUGCUCUCGCAGUCCCUGCCCGUGAAGGGCACUUUGCAGACGCACUUGUAACCGUUGACCUUGUCGAUGCAGGUGCCUCCGUUUCCGCAGGGAUUGGUCA ....(((((((((.....)))))).....((((((((((..(..(((....)))..).((.((((((((....((((((...)))))))))))))).)).......))))))))))))). ( -48.30) >DroEre_CAF1 1721 120 - 1 UGCUGGCACAGGGAUCCAUCUUGCUCUCGCAGUCCCUGCCCGUGAAUGGCACCUUGCAGACGCACUUGUAGCCGUUGACCUUGUCGAUGCAGGUGCCACCAUUGCCGCACGGAUUGGUCA ....(((.(((((((......(((....)))))))))).(((((..(((((((((((((......)))))((.((((((...)))))))))))))))).........)))))....))). ( -41.90) >DroYak_CAF1 1649 120 - 1 UGCUGGCGCAGGGAUCCAUUUUGCUCUCGCAGUCCCUGCCGGUGAAUGGCACCUUGCAGACGCACUUGUAUCCGUUGACCUUGUCGAUGCAGGUGCCACCAUUGCCGCAGGGAUUCGUCA (((.((.((((((.....)))))).)).)))((((((((.((..(.((((((((.((.((..(....)..)).((((((...))))))))))))))))...)..))))))))))...... ( -49.40) >consensus UGCUGGCGCAGGGAUCCAUCUUGCUCUCGCAGUCCCUGCCCGUGAAGGGCACCUUGCAGACGCACUUGUAGCCGUUGACCUUGUCGAUGCAGGUGCCACCAUUGCCGCACGGAUUGGUCA ....(((((((((.....)))))).....((((((((((..(((..(((((((((((((......)))))..(((((((...))))))).)))))))).)))....))))))))))))). (-39.96 = -39.40 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:58 2006