Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,020,764 – 3,020,884 |
Length | 120 |
Max. P | 0.595773 |
Location | 3,020,764 – 3,020,884 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.19 |
Mean single sequence MFE | -38.66 |
Consensus MFE | -34.03 |
Energy contribution | -35.65 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.14 |
Mean z-score | -1.46 |
Structure conservation index | 0.88 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3020764 120 + 22224390 UACUAUUGUCAGUGCCAGGCGGGAACCAGUGGCAAGAAUUGCGAGGUCAAUGUGAACGAAUGCCACAGUAAUCCCUGCAACAAUGGUGCCACCUGCAUCGAUGGCAUCAAUUCGUACAAG (((.((((...((((((.(((((.((((...(((.(.(((((..(((...((....))...)))...))))).).))).....))))....))))).....))))))))))..))).... ( -33.50) >DroSec_CAF1 1183 120 + 1 UACUACUGCCAGUGCCAGGCGGGAACCAGUGGCAAGAACUGCGAGGUCAACGUGAACGAGUGCCACAGCAAUCCCUGCAACAAUGGAGCCACCUGCAUCGACGGCAUCAACUCGUACAAG ......((((.((((.(((..((..(((((((((.((.((....))))..((....))..)))))).(((.....))).....)))..)).)))))))....)))).............. ( -33.60) >DroEre_CAF1 1201 120 + 1 UACUACUGCCAGUGCCAGGCUGGCACCAGUGGCAAGAACUGUGAGGUCAAUGUGAACGAAUGCCACAGCAAUCCCUGCAACAAUGGUGCCACCUGCAUCGAUGGCAUCAACUCGUACAAG ......(((((((((.(((.((((((((((((((.((.((....))))..((....))..)))))).(((.....))).....)))))))))))))))...))))).............. ( -43.50) >DroYak_CAF1 1129 120 + 1 UACUACUGCCAGUGCCAGGCUGGCACCAGUGGCAAGAACUGCGAGGUCAACGUGAAUGAGUGCCACAGCAAUCCGUGCAACAAUGGUGCCACCUGCAUCGAUGGCAUCAACUCCUACAAG ......(((((((((.(((.((((((((((((((......(((.......))).......)))))).(((.....))).....)))))))))))))))...))))).............. ( -44.02) >consensus UACUACUGCCAGUGCCAGGCGGGAACCAGUGGCAAGAACUGCGAGGUCAACGUGAACGAAUGCCACAGCAAUCCCUGCAACAAUGGUGCCACCUGCAUCGAUGGCAUCAACUCGUACAAG ......(((((((((.(((.((((((((((((((.((.((....))))..((....))..)))))).(((.....))).....)))))))))))))))...))))).............. (-34.03 = -35.65 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:56 2006