Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,020,444 – 3,020,564 |
Length | 120 |
Max. P | 0.748685 |
Location | 3,020,444 – 3,020,564 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -45.98 |
Consensus MFE | -41.95 |
Energy contribution | -42.33 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.06 |
Mean z-score | -1.53 |
Structure conservation index | 0.91 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3020444 120 - 22224390 AUCCCGGCGGACAUUCGCAGCUGUAGCCCGCUAUAGAGUCGUGACAGAUGCCACGAUUCCGGCAUGGUUGCGACUGACAGUCGUCUAUAUUGAUUUGACAUCGUGCGCCCGUAAAGCCCA .....((((.((..((((((((((.(((.......((((((((........)))))))).)))))))))))))......((((((......)))..)))...)).))))........... ( -40.30) >DroSec_CAF1 863 120 - 1 AGCCCGGCGGACACUCGCAGCUGUAGCCCGCUAUGGAGUCGUGGCAGAUGCCCCGAUUCCUGCAUGGCUGCGACUGACAGUCGUCUAUGUUGAUCUGACAUCGUGCGCCCGUGAAGCCCA .....((((.((....((((.(((((((.((...(((((((.(((....))).))))))).))..))))))).))).).((((((......)))..)))...)).))))........... ( -47.60) >DroEre_CAF1 881 120 - 1 AUCCUGGCGGACACUCGCAGCUGUAACCCGCUAUCGAGUCGUGGCAAAUGCCCCGAUUCCUGCACGGCUGCGACUGACAGUCGUCUAUAUUGAUCUGACAUCGUGCGCCCGUGAAGCCCA .(((.((((.((..((((((((((.....((....((((((.(((....))).))))))..))))))))))))......((((((......)))..)))...)).)))).).))...... ( -45.20) >DroYak_CAF1 809 120 - 1 AGCCCGGCGGACACUCGCAGCUGUAGCCCGCUAUCGAGUCGUGGCAGAUGCCACGAUUCCGGCAUGGCUGCGAUUGACAGUCGUCUAUGUUGAUCUGACAUCGUGCGCCCAUGAAGCCCA .....((((.((....((((((((.(((.......((((((((((....)))))))))).)))))))))))(((..(((........)))..))).......)).))))........... ( -50.80) >consensus AGCCCGGCGGACACUCGCAGCUGUAGCCCGCUAUCGAGUCGUGGCAGAUGCCACGAUUCCGGCAUGGCUGCGACUGACAGUCGUCUAUAUUGAUCUGACAUCGUGCGCCCGUGAAGCCCA .....((((.((..((((((((((.....((....((((((((((....))))))))))..))))))))))))......((((((......)))..)))...)).))))........... (-41.95 = -42.33 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:55 2006