Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,018,855 – 3,019,038 |
Length | 183 |
Max. P | 0.984303 |
Location | 3,018,855 – 3,018,964 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 95.14 |
Mean single sequence MFE | -32.16 |
Consensus MFE | -28.80 |
Energy contribution | -29.08 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -1.40 |
Structure conservation index | 0.90 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3018855 109 + 22224390 CCUUGUCUGUUUUCACGUUACACUUUGUUUGCCCAUUCGCUCCGCAUGCGCAGCAGUGCUGCCAGCGAAAGGUUCAAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUA ..(((((((((((...(((((..((((...(((..((((((..(((.((((....))))))).)))))).))).))))..))))).)))))))).)))........... ( -34.00) >DroSec_CAF1 6531 109 + 1 CCUUGUCUGUUUUCACGUUACACUUUGUUUGCCCAUUCGCUCCGCAUGCGCAGCAGUGCUGCCAGCGAAAGGUUCGAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUA ..(((((((((((...(((((..((((...(((..((((((..(((.((((....))))))).)))))).))).))))..))))).)))))))).)))........... ( -33.70) >DroSim_CAF1 6713 109 + 1 CCUUGUCUGUUUUCACGUUACACUUUGUUUGCCCAUUCGCUCCGCAUGCGCAGCAGUGCUGCCAGCGAAAGGUUCGAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUA ..(((((((((((...(((((..((((...(((..((((((..(((.((((....))))))).)))))).))).))))..))))).)))))))).)))........... ( -33.70) >DroEre_CAF1 6858 109 + 1 CCUUGUCUGUUUUCACGUUACACUUUGUUUGCCCAUUCGCUCCGCAUGCGCAGCAGUGCUGCCAGCGAAAGGUACGAAAAGUAGCCAAAGCCAGGCAAAGAAAAAUGUA ..(((((((((((...(((((..(((((..(((..((((((..(((.((((....))))))).)))))).))))))))..))))).)))).)))))))........... ( -33.80) >DroYak_CAF1 6784 109 + 1 CCUUGUCUGUUUUCACGUUACACUUUGUUUGCCCAUUCGCUCCGCAUGCGCAGCAGUGCUGCCGGCAAAAGAUUCGAAAAGUAGCCAAUGCAAGGCAAAGAAAAAUAUA ..((((((((......(((((..((((((((((.....((.......))(((((...))))).)))))).....))))..)))))....)).))))))........... ( -25.60) >consensus CCUUGUCUGUUUUCACGUUACACUUUGUUUGCCCAUUCGCUCCGCAUGCGCAGCAGUGCUGCCAGCGAAAGGUUCGAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUA ..(((((((((((...(((((..((((...(((..((((((..(((.((((....))))))).)))))).))).))))..))))).)))))))).)))........... (-28.80 = -29.08 + 0.28)
Location | 3,018,855 – 3,018,964 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 95.14 |
Mean single sequence MFE | -33.94 |
Consensus MFE | -33.06 |
Energy contribution | -32.30 |
Covariance contribution | -0.76 |
Combinations/Pair | 1.14 |
Mean z-score | -1.49 |
Structure conservation index | 0.97 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982481 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3018855 109 - 22224390 UACAUUUUUCUUUGCUCCGCUUCGGCUACUUUUUGAACCUUUCGCUGGCAGCACUGCUGCGCAUGCGGAGCGAAUGGGCAAACAAAGUGUAACGUGAAAACAGACAAGG ((((((((..(((((.((((....))...........(.(((((((((((((...))))).)).)))))).)...))))))).))))))))..((....))........ ( -34.00) >DroSec_CAF1 6531 109 - 1 UACAUUUUUCUUUGCUCCGCUUCGGCUACUUUUCGAACCUUUCGCUGGCAGCACUGCUGCGCAUGCGGAGCGAAUGGGCAAACAAAGUGUAACGUGAAAACAGACAAGG ((((((((..(((((.((((....)).....((((....(((((((((((((...))))).)).)))))))))).))))))).))))))))..((....))........ ( -35.40) >DroSim_CAF1 6713 109 - 1 UACAUUUUUCUUUGCUCCGCUUCGGCUACUUUUCGAACCUUUCGCUGGCAGCACUGCUGCGCAUGCGGAGCGAAUGGGCAAACAAAGUGUAACGUGAAAACAGACAAGG ((((((((..(((((.((((....)).....((((....(((((((((((((...))))).)).)))))))))).))))))).))))))))..((....))........ ( -35.40) >DroEre_CAF1 6858 109 - 1 UACAUUUUUCUUUGCCUGGCUUUGGCUACUUUUCGUACCUUUCGCUGGCAGCACUGCUGCGCAUGCGGAGCGAAUGGGCAAACAAAGUGUAACGUGAAAACAGACAAGG ((((((((..((((((((((....)))....(((((....((((((((((((...))))).)).)))))))))).))))))).))))))))..((....))........ ( -36.10) >DroYak_CAF1 6784 109 - 1 UAUAUUUUUCUUUGCCUUGCAUUGGCUACUUUUCGAAUCUUUUGCCGGCAGCACUGCUGCGCAUGCGGAGCGAAUGGGCAAACAAAGUGUAACGUGAAAACAGACAAGG ((((((((..(((((((.((....)).....((((..(((..((((((((....))))).)))...))).)))).))))))).))))))))..((....))........ ( -28.80) >consensus UACAUUUUUCUUUGCUCCGCUUCGGCUACUUUUCGAACCUUUCGCUGGCAGCACUGCUGCGCAUGCGGAGCGAAUGGGCAAACAAAGUGUAACGUGAAAACAGACAAGG ((((((((..(((((((.((....)).....((((....(((((((((((((...))))).)).)))))))))).))))))).))))))))..((....))........ (-33.06 = -32.30 + -0.76)
Location | 3,018,889 – 3,019,003 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 89.25 |
Mean single sequence MFE | -40.72 |
Consensus MFE | -32.22 |
Energy contribution | -32.58 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -2.52 |
Structure conservation index | 0.79 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3018889 114 + 22224390 AUUCGCUCCGCAUGCGCAGCAGUGCUGCCAGCGAAAGGUUCAAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUAGCUGACU-UUAGGGCUCAUAAUUGUGGCCGCAGUUGGCGG ....(((((((.((((((((...)))))..)))...(((((.....).))))...))))))).............((..(((-...((.(.((....)).).))..)))..)).. ( -41.50) >DroSec_CAF1 6565 113 + 1 AUUCGCUCCGCAUGCGCAGCAGUGCUGCCAGCGAAAGGUUCGAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUAGCUGACU-UUAGGGCUCAUAAUCG-GGCUGGAGUUGGCGG ....(((((((.((((((((...)))))..)))...(((((.....).))))...))))))).............((..(((-((..(((((......)-)))))))))..)).. ( -44.00) >DroSim_CAF1 6747 114 + 1 AUUCGCUCCGCAUGCGCAGCAGUGCUGCCAGCGAAAGGUUCGAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUAGCUGACU-CUAGGGCUCAUAAUUGCGGCUGGAGUUGGCGG ....(((((((.((((((((...)))))..)))...(((((.....).))))...))))))).............((..(((-((((.((........))..)))))))..)).. ( -46.00) >DroEre_CAF1 6892 112 + 1 AUUCGCUCCGCAUGCGCAGCAGUGCUGCCAGCGAAAGGUACGAAAAGUAGCCAAAGCCAGGCAAAGAAAAAUGUAGCUGGCUUUUAGGGCUC---AUUGUAGCUAAAGUUGGCGG ....(((.((....)).)))....((((((((...((.(((((...(.(((((((((((((((........)))..))))))))...)))))---.))))).))...)))))))) ( -40.00) >DroYak_CAF1 6818 114 + 1 AUUCGCUCCGCAUGCGCAGCAGUGCUGCCGGCAAAAGAUUCGAAAAGUAGCCAAUGCAAGGCAAAGAAAAAUAUAGCUAACU-UUAGGGCUCAACAUUGUGGCUAGCGUUGGCGG ....((.(.(((.((((....))))))).))).................((((((((.((.((...........((((....-....))))........)).)).)))))))).. ( -32.11) >consensus AUUCGCUCCGCAUGCGCAGCAGUGCUGCCAGCGAAAGGUUCGAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUAGCUGACU_UUAGGGCUCAUAAUUGUGGCUGGAGUUGGCGG ....(((((((.((((((((...)))))..)))...(((((.....).))))...))))))).............(((((((.....(((((......).))))..))))))).. (-32.22 = -32.58 + 0.36)
Location | 3,018,924 – 3,019,038 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 83.48 |
Mean single sequence MFE | -33.19 |
Consensus MFE | -20.54 |
Energy contribution | -20.30 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.28 |
Mean z-score | -1.96 |
Structure conservation index | 0.62 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3018924 114 + 22224390 AGGUUCAAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUAGCUGACU-UUAGGGCUCAUAAUUGUGGCCGCAGUUGGCGGGAAAUAAGCCAAAAGGAGCAGCGCUGAUGCGCUGC .((((.........(((((.((((.((((......(((.((((....-....)))))))..))))..))))..)))))........)))).......(((((((....))))))) ( -37.33) >DroSec_CAF1 6600 112 + 1 AGGUUCGAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUAGCUGACU-UUAGGGCUCAUAAUCG-GGCUGGAGUUGGCGGGAAAAGAGCCAA-AGAGGCAGCGCCAGCGCGCAGU .(((((.....((..(((...))).)).............((..(((-((..(((((......)-)))))))))..)).......)))))..-.......((((....))))... ( -32.70) >DroSim_CAF1 6782 113 + 1 AGGUUCGAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUAGCUGACU-CUAGGGCUCAUAAUUGCGGCUGGAGUUGGCGGGAAAAAAGCCAA-AGAGGCAGCGCCAGCGCGCAGC .(((((.....).))))...(((..((.............((..(((-((((.((........))..)))))))..)).((......(((..-...)))....)).)).)))... ( -34.60) >DroEre_CAF1 6927 111 + 1 AGGUACGAAAAGUAGCCAAAGCCAGGCAAAGAAAAAUGUAGCUGGCUUUUAGGGCUC---AUUGUAGCUAAAGUUGGCGGGAAAGAAGCCAA-AGGGGCAACGCUGCGGCGCAGA .(((((.....)).)))(((((((((((........)))..))))))))..(.((((---(.(((.(((....(((((.........)))))-...))).))).)).))).)... ( -33.20) >DroYak_CAF1 6853 113 + 1 AGAUUCGAAAAGUAGCCAAUGCAAGGCAAAGAAAAAUAUAGCUAACU-UUAGGGCUCAACAUUGUGGCUAGCGUUGGCGGGAAAAAAACCAA-AGGGGCAACGCUGGUGCGCAGC ..............(((.......)))............((((....-....)))).....(((((((((((((((.(((........))..-...).)))))))))).))))). ( -28.10) >consensus AGGUUCGAAAAGUAGCCGAAGCGGAGCAAAGAAAAAUGUAGCUGACU_UUAGGGCUCAUAAUUGUGGCUGGAGUUGGCGGGAAAAAAGCCAA_AGGGGCAGCGCUGGCGCGCAGC .(((((.....).))))...(((..((.............(((((((.....(((((......).))))..))))))).........(((......)))...))...)))..... (-20.54 = -20.30 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:54 2006