Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 423,660 – 423,780 |
Length | 120 |
Max. P | 0.952694 |
Location | 423,660 – 423,780 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -31.37 |
Consensus MFE | -28.87 |
Energy contribution | -28.43 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -2.67 |
Structure conservation index | 0.92 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 423660 120 + 22224390 UGCUGUGUAUUACAAUACUUUAAGUACUGUCUUCACUACUUAGAUUAUCAUCAACCCUGCUAAGCUGCUCCAGCAACAGCUUAGUUUGGAUUAGGUAUCCUGCAGCCUUGGGAACACAAC ...(((((..(((.(((.((((((((.((....)).)))))))).)))......((..(((((((((.........)))))))))..)).....)))((((........))))))))).. ( -30.80) >DroSec_CAF1 26073 120 + 1 UUCUGUGUAUUACAAUACUUUAAGUAGUGUCUUCACUAUUUAGAUUAUCAUGAACCCUGCUGAGCUGCUCCAGCAACAGCUUAGUUUGCCUUAGGUAUCCUGCAGCCUUGGGAACACAAC ...(((((.(((..(((.(((((((((((....))))))))))).)))..))).(((.(((((((((.........)))))(((..((((...))))..)))))))...))).))))).. ( -35.60) >DroSim_CAF1 6547 120 + 1 UUCUGUGUAUUACAAUACUUUAAGUACUGUCUUCACUAUUUAGAUUAUCAUCAACCCUGCUGAGCUGCUCCAGUAACAGCUUAGUUUGUCUUAGGUAUCCUGCAGCCUUGGGAACACAAC ...(((((......(((.((((((((.((....)).)))))))).)))......(((.(((((((((.........))))))))).......((((........)))).))).))))).. ( -27.70) >consensus UUCUGUGUAUUACAAUACUUUAAGUACUGUCUUCACUAUUUAGAUUAUCAUCAACCCUGCUGAGCUGCUCCAGCAACAGCUUAGUUUGCCUUAGGUAUCCUGCAGCCUUGGGAACACAAC ...(((((......(((.((((((((.((....)).)))))))).)))......(((.(((((((((.........))))))))).......((((........)))).))).))))).. (-28.87 = -28.43 + -0.44)
Location | 423,660 – 423,780 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -33.53 |
Consensus MFE | -27.22 |
Energy contribution | -27.33 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.21 |
Structure conservation index | 0.81 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 423660 120 - 22224390 GUUGUGUUCCCAAGGCUGCAGGAUACCUAAUCCAAACUAAGCUGUUGCUGGAGCAGCUUAGCAGGGUUGAUGAUAAUCUAAGUAGUGAAGACAGUACUUAAAGUAUUGUAAUACACAGCA (((((((...(((..((((.((((.....))))....(((((((((.....)))))))))))))..)))(..(((...((((((.((....)).))))))...)))..)...))))))). ( -39.90) >DroSec_CAF1 26073 120 - 1 GUUGUGUUCCCAAGGCUGCAGGAUACCUAAGGCAAACUAAGCUGUUGCUGGAGCAGCUCAGCAGGGUUCAUGAUAAUCUAAAUAGUGAAGACACUACUUAAAGUAUUGUAAUACACAGAA ((..((..(((...(((..(((...)))..))).......((((..((((...)))).)))).)))..))..))..........(((...(((.(((.....))).)))....))).... ( -32.10) >DroSim_CAF1 6547 120 - 1 GUUGUGUUCCCAAGGCUGCAGGAUACCUAAGACAAACUAAGCUGUUACUGGAGCAGCUCAGCAGGGUUGAUGAUAAUCUAAAUAGUGAAGACAGUACUUAAAGUAUUGUAAUACACAGAA .((((((.(((...((((.(((...)))...........(((((((.....))))))))))).)))..(((....)))............(((((((.....)))))))...)))))).. ( -28.60) >consensus GUUGUGUUCCCAAGGCUGCAGGAUACCUAAGACAAACUAAGCUGUUGCUGGAGCAGCUCAGCAGGGUUGAUGAUAAUCUAAAUAGUGAAGACAGUACUUAAAGUAUUGUAAUACACAGAA .((((((.(((...((((.(((...)))...........(((((((.....))))))))))).)))........................(((((((.....)))))))...)))))).. (-27.22 = -27.33 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:24 2006