Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,005,805 – 3,006,150 |
Length | 345 |
Max. P | 0.986258 |
Location | 3,005,805 – 3,005,918 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.93 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -15.56 |
Energy contribution | -15.06 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.16 |
Mean z-score | -2.39 |
Structure conservation index | 0.57 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3005805 113 + 22224390 AAGCAAGCGAUCGCAAAGAGCCACAUAAAAUAAGCUAAGGUUU--UUCGAACGCAGA-----GAGGAAAGCCAACAACGAGAGCGAUUCCAAAUCAAGAAAAUGUGGUAAAUGGAUCAGC ......((((((.((....(((((((.......(((..(((((--(((.........-----..))))))))..(.....))))(((.....)))......)))))))...)))))).)) ( -24.40) >DroSec_CAF1 382649 102 + 1 AAG----CGAUCGU-AAGAGCCACAUAAA---AGCUAAGGUUU--CUCGGACGCAGA-----GAGGAAAGCCAA---CCAGAGCAAUUCCAAAUCAAGAAAAUGUGGUAAAUGGAUCAGC ..(----(((((..-....(((((((...---.(((..(((((--(((.......))-----))((....))))---))..)))..(((........))).))))))).....)))).)) ( -25.50) >DroEre_CAF1 414413 103 + 1 AAG----CGAUCG--AGGAGCCACAUAAA---AGCUAAGGUUUUUUUUGGACGCAGA-----GAGAAAAGCCAA---GCAGAGCAAUUCCAAAUCAAGAAAAUGUGGUAAAUGGAUCAGC ..(----(((((.--(...(((((((...---.(((..((((((((((.........-----)))))))))).)---)).......(((........))).)))))))...).)))).)) ( -26.20) >DroYak_CAF1 395722 107 + 1 AAG----CGAUCGC-AAGAGCCGCAUAAA---AGCUAAGGUUU--UGUGGACACAGACUUUUGCGCUCUGCCAA---CCAGAGCAAUUCCAAAUCAAGAAAAUGUGGUAAAUGGAUCAGC ..(----(((((.(-(...(((((((...---.((.(((((((--.((....))))))))).))((((((....---.)))))).................)))))))...)))))).)) ( -32.30) >consensus AAG____CGAUCGC_AAGAGCCACAUAAA___AGCUAAGGUUU__UUCGGACGCAGA_____GAGGAAAGCCAA___CCAGAGCAAUUCCAAAUCAAGAAAAUGUGGUAAAUGGAUCAGC ........((((.......(((((((.......(((..(((((..(((..............)))..))))).........)))..(((........))).))))))).....))))... (-15.56 = -15.06 + -0.50)
Location | 3,005,878 – 3,005,995 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.36 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -24.44 |
Energy contribution | -24.25 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.47 |
Structure conservation index | 0.83 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962162 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3005878 117 + 22224390 GAGCGAUUCCAAAUCAAGAAAAUGUGGUAAAUGGAUCAGCA-UGGAUCAACCGUAAACGAUCCGAGGAUCAGUUGGCCUGGGCCACAAGACCGAA--AAAAAAAAAACAGCUCUAAUAGC (((((((.....))).......((((((....((.((((((-(((.....))))....((((....)))).)))))))...))))))........--............))))....... ( -31.10) >DroSec_CAF1 382711 112 + 1 GAGCAAUUCCAAAUCAAGAAAAUGUGGUAAAUGGAUCAGCA-UGGAUCAACCGUAAACGAUCCGAGGAUCAGUUGGCCUGGGCCACAAGACCGAA--AA-----AAUCAGCUCUAAUAGC ((((..(((........)))..((((((....((.((((((-(((.....))))....((((....)))).)))))))...))))))........--..-----.....))))....... ( -30.20) >DroEre_CAF1 414476 108 + 1 GAGCAAUUCCAAAUCAAGAAAAUGUGGUAAAUGGAUCAGCA-UGGAUCAACCGUAAACGAUCCGAGGAUCAGUU------GGCCACAAGACCGAACAGA-----AAUCAGCUCUAAUAGC ((((..(((........)))..((((((.(((.((((....-((((((..........))))))..)))).)))------.))))))............-----.....))))....... ( -26.90) >DroYak_CAF1 395789 112 + 1 GAGCAAUUCCAAAUCAAGAAAAUGUGGUAAAUGGAUCAGCAACGGAUCAGUCGUAAACGAUCCGAGGAUCAGUUGUUGU-GGCCACAAGACCGAA--AA-----AAUCAGCUCUAAUAGC ((((..(((........)))....((((...(((..(((((((.((((.((((....)))).....)))).))))))).-..)))....))))..--..-----.....))))....... ( -29.80) >consensus GAGCAAUUCCAAAUCAAGAAAAUGUGGUAAAUGGAUCAGCA_UGGAUCAACCGUAAACGAUCCGAGGAUCAGUUGGCCU_GGCCACAAGACCGAA__AA_____AAUCAGCUCUAAUAGC ((((..(((........)))..((((((.(((.((((.....((((((..........))))))..)))).))).......))))))......................))))....... (-24.44 = -24.25 + -0.19)
Location | 3,005,918 – 3,006,035 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.36 |
Mean single sequence MFE | -34.95 |
Consensus MFE | -30.88 |
Energy contribution | -31.12 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.52 |
Structure conservation index | 0.88 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3005918 117 - 22224390 UUGGCGAUAAGAUCGCUUUGAACUUUUGUCUUGAGCUUGAGCUAUUAGAGCUGUUUUUUUUUU--UUCGGUCUUGUGGCCCAGGCCAACUGAUCCUCGGAUCGUUUACGGUUGAUCCA-U ..(((.((((((((((((...((....))...))))...((((.....))))...........--...)))))))).)))(((.....)))......((((((........)))))).-. ( -34.50) >DroSec_CAF1 382751 112 - 1 UUGGCGAUAAGAUCGCUUUGAACUUUUGUCUUGAGCUUGAGCUAUUAGAGCUGAUU-----UU--UUCGGUCUUGUGGCCCAGGCCAACUGAUCCUCGGAUCGUUUACGGUUGAUCCA-U ..........(((((((.(((((.......(((.(((((.(((((.(((.((((..-----..--.))))))).))))).))))))))..((((....))))))))).)).)))))..-. ( -35.60) >DroEre_CAF1 414516 108 - 1 UUGGCGAUAAGAUCGCUUUGAACUUUUGUCUUCAGCUUGAGCUAUUAGAGCUGAUU-----UCUGUUCGGUCUUGUGGCC------AACUGAUCCUCGGAUCGUUUACGGUUGAUCCA-U (((((.((((((((.....((((....(...(((((((.........)))))))..-----.).)))))))))))).)))------)).........((((((........)))))).-. ( -35.60) >DroYak_CAF1 395829 112 - 1 UUGGCGAUAAGAUCGCUUUGAACUUUUGUCUUGAGCUUGAGCUAUUAGAGCUGAUU-----UU--UUCGGUCUUGUGGCC-ACAACAACUGAUCCUCGGAUCGUUUACGACUGAUCCGUU .((((.(((((((((((((((.(((..((.....))..)))...))))))).((..-----..--.)))))))))).)))-)..............(((((((........))))))).. ( -34.10) >consensus UUGGCGAUAAGAUCGCUUUGAACUUUUGUCUUGAGCUUGAGCUAUUAGAGCUGAUU_____UU__UUCGGUCUUGUGGCC_AGGCCAACUGAUCCUCGGAUCGUUUACGGUUGAUCCA_U ..(((.((((((((((((...((....))...))))...((((.....))))................)))))))).))).................((((((........))))))... (-30.88 = -31.12 + 0.25)
Location | 3,006,035 – 3,006,150 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.58 |
Mean single sequence MFE | -20.33 |
Consensus MFE | -15.98 |
Energy contribution | -15.97 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.05 |
Mean z-score | -1.44 |
Structure conservation index | 0.79 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3006035 115 + 22224390 AUCA-AAAAGAAAAACAAACCAAAAAAAUGGCUUACAGAAAGAGGGGCCAGCACAUA----UACACAUGGCAUGGCCAUUGGCUUGAUCGUGCCUUUGAUGAUCAUCGCAAAACCAAAAC ....-..............(((......)))............(((((((((.(((.----.....))))).)))))....((.(((((((.......)))))))..))....))..... ( -24.90) >DroSec_CAF1 382863 104 + 1 AUCA-AA-----AAACAAACCAAA-AAAUGGCUUACAGAAAGAGGGGCCAGCACAUA----UACACAU-----GGCCAUUGGCUUGAUCGUGCCUUUGAUGAUCAUCGCAAAACCAAAAC ....-..-----.......(((..-...)))............(((((((.......----......)-----))))....((.(((((((.......)))))))..))....))..... ( -19.72) >DroEre_CAF1 414624 105 + 1 AUCACAA-----AAACAAACCGAA-AAAUGGCUUAAAGAAAGAGAGGGCAGCACAUA----UACACAU-----GGCCAUUGGCUUGAUCGUGCCUUUGAUGAUCAUCGCAAAACCAAAAA .......-----............-.(((((((.............(......)...----.......-----))))))).((.(((((((.......)))))))..))........... ( -14.80) >DroYak_CAF1 395941 107 + 1 AUCA-AA-----AAACAAACCAAA-AAAUGGCUUCAAGAAAGAGAGGCCAGCACAUACACAUACACAU-----GGCCAUUGGCUUGAUCGUGCCUUUGAUGAUCAUCGCAAAACCAAAA- ....-..-----............-...(((((((........)))))))((................-----((((...))))(((((((.......)))))))..))..........- ( -21.90) >consensus AUCA_AA_____AAACAAACCAAA_AAAUGGCUUAAAGAAAGAGAGGCCAGCACAUA____UACACAU_____GGCCAUUGGCUUGAUCGUGCCUUUGAUGAUCAUCGCAAAACCAAAAC ............................((((((..........))))))((.....................((((...))))(((((((.......)))))))..))........... (-15.98 = -15.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:41 2006