Locus 1027

Sequence ID X_DroMel_CAF1
Location 2,996,068 – 2,996,160
Length 92
Max. P 0.960565
window1655

overview

Window 5

Location 2,996,068 – 2,996,160
Length 92
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 92.34
Mean single sequence MFE -20.98
Consensus MFE -19.44
Energy contribution -19.20
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.51
Structure conservation index 0.93
SVM decision value 1.52
SVM RNA-class probability 0.960565
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2996068 92 + 22224390
CUUACUCUUUCUGCCAUGGCCAGUUUAAUGAGUUUUCUUUAUGGCCAACACAUGUACAUUUU-CGAGUCGGUAGAUACAGGU------ACUC------ACACACA
..((((...((((((.((((((.......(((....)))..))))))((....)).......-......))))))....)))------)...------....... ( -19.60)
>DroSec_CAF1 373062 91 + 1
CUUACUCUUUCUGCCAUGGCCAGUUUAAUGAGUUUUCUUUAUGGCCAACACAUGUACAU-UU-CGAGUCGGUAGAUACAGGU------ACUC------ACACACA
..((((...((((((.((((((.......(((....)))..))))))((....))....-..-......))))))....)))------)...------....... ( -19.60)
>DroSim_CAF1 338275 91 + 1
CUUACUCUUUCUGCCAUGGCCAGUUUAAUGAGUUUUCUUUAUGGCCAACACAUGUACGU-UU-CGAGUCGGCAGAUACAGGU------ACUC------ACACACA
..((((...((((((.((((((.......(((....)))..))))))((....))....-..-......))))))....)))------)...------....... ( -21.60)
>DroEre_CAF1 404748 92 + 1
CUUACUCUUUCUGCCAUGGCCAGUUUAAUGAGUUUUCUUUAUGGCCAACACAUGUACAU-GUACCAGUCGGCAGAUACAGGU------ACUC------ACACACA
..((((...((((((.((((((.......(((....)))..))))))..((((....))-)).......))))))....)))------)...------....... ( -24.20)
>DroYak_CAF1 385800 103 + 1
CUUACUCUUUCUGCCAUGGCCAGUUUAAUGAGUUUUCUUUAUGGCCAACACAUGUACAU-UU-CGAGUCGGUAGAUACAGGUACAGGUACUCACACACACACACA
((((((...((((((.((((((.......(((....)))..))))))((....))....-..-......))))))....)))).))................... ( -19.90)
>consensus
CUUACUCUUUCUGCCAUGGCCAGUUUAAUGAGUUUUCUUUAUGGCCAACACAUGUACAU_UU_CGAGUCGGUAGAUACAGGU______ACUC______ACACACA
....((...((((((.((((((.......(((....)))..))))))((....))..............))))))...))......................... (-19.44 = -19.20 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:36 2006