Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,994,520 – 2,994,617 |
Length | 97 |
Max. P | 0.999901 |
Location | 2,994,520 – 2,994,617 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 98.35 |
Mean single sequence MFE | -31.15 |
Consensus MFE | -31.20 |
Energy contribution | -31.24 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.80 |
Structure conservation index | 1.00 |
SVM decision value | 4.45 |
SVM RNA-class probability | 0.999901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2994520 97 + 22224390 CAUGUAUGGCGAUGCAUAACCAACAUGCCCAUGGUUAUGGAUCGUAAAGUGUGCACUUUAUGGUCGGAAUGGAUCAUCCACAUAAAGUUGCAACCAA (((.....(((((.((((((((.........)))))))).)))))...)))(((((((((((...(((........))).))))))).))))..... ( -31.60) >DroSec_CAF1 371569 97 + 1 CAUGUAUGGCGAUGCAUAACCAACAUGCCCAUGGUUAUGGGUCGUAAAGUGUGCACUUUAUGGUCGGAAUGGAUCAUCCACAUAAAGUUGCAACCAA (((.....(((((.((((((((.........)))))))).)))))...)))(((((((((((...(((........))).))))))).))))..... ( -31.90) >DroSim_CAF1 336799 97 + 1 CAUGUAUGGCGAUGCAUAACCAACGUGCCCAUGGUUAUGGGUCGUAAAGUGUGCACUUUAUGGUCGGAAUGGAUCAUCCACAUAAAGUUGCAACCAA (((.....(((((.((((((((.........)))))))).)))))...)))(((((((((((...(((........))).))))))).))))..... ( -31.90) >DroEre_CAF1 403200 97 + 1 CAUGUAUGGCGAUGCAUAACCAACAUGCCCAUGGUUAUGGGUCGUAAAGUGUGCACUUUAUGGUCGGAAUGGAUCAUCCACAUAACGCUGCAACCAA ..(((...(((((.((((((((.........)))))))).)))))..(((((.......((((((......)))))).......))))))))..... ( -28.44) >DroYak_CAF1 384240 97 + 1 CAUGUAUGGCGAUGCAUAACCAACAUGCCCAUGGUUAUGGGUCGUAAAGUGUGCACUUUAUGGUCGGAAUGGAUCAUCCACAUAAAGUUGCAACCAA (((.....(((((.((((((((.........)))))))).)))))...)))(((((((((((...(((........))).))))))).))))..... ( -31.90) >consensus CAUGUAUGGCGAUGCAUAACCAACAUGCCCAUGGUUAUGGGUCGUAAAGUGUGCACUUUAUGGUCGGAAUGGAUCAUCCACAUAAAGUUGCAACCAA (((.....(((((.((((((((.........)))))))).)))))...)))(((((((((((...(((........))).))))))).))))..... (-31.20 = -31.24 + 0.04)
Location | 2,994,520 – 2,994,617 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 98.35 |
Mean single sequence MFE | -27.98 |
Consensus MFE | -27.10 |
Energy contribution | -27.14 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.25 |
Structure conservation index | 0.97 |
SVM decision value | 3.30 |
SVM RNA-class probability | 0.998964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2994520 97 - 22224390 UUGGUUGCAACUUUAUGUGGAUGAUCCAUUCCGACCAUAAAGUGCACACUUUACGAUCCAUAACCAUGGGCAUGUUGGUUAUGCAUCGCCAUACAUG .((((((((.(((((((((((........))))..)))))))))))........(((.((((((((.........)))))))).)))))))...... ( -29.50) >DroSec_CAF1 371569 97 - 1 UUGGUUGCAACUUUAUGUGGAUGAUCCAUUCCGACCAUAAAGUGCACACUUUACGACCCAUAACCAUGGGCAUGUUGGUUAUGCAUCGCCAUACAUG .((((((((.(((((((((((........))))..)))))))))))........((..((((((((.........))))))))..))))))...... ( -27.90) >DroSim_CAF1 336799 97 - 1 UUGGUUGCAACUUUAUGUGGAUGAUCCAUUCCGACCAUAAAGUGCACACUUUACGACCCAUAACCAUGGGCACGUUGGUUAUGCAUCGCCAUACAUG .((((((((.(((((((((((........))))..)))))))))))........((..((((((((((....)).))))))))..))))))...... ( -29.00) >DroEre_CAF1 403200 97 - 1 UUGGUUGCAGCGUUAUGUGGAUGAUCCAUUCCGACCAUAAAGUGCACACUUUACGACCCAUAACCAUGGGCAUGUUGGUUAUGCAUCGCCAUACAUG .((((((((.......((((.....)))).(((((..((((((....)))))).(.(((((....))))))..)))))...))))..))))...... ( -25.60) >DroYak_CAF1 384240 97 - 1 UUGGUUGCAACUUUAUGUGGAUGAUCCAUUCCGACCAUAAAGUGCACACUUUACGACCCAUAACCAUGGGCAUGUUGGUUAUGCAUCGCCAUACAUG .((((((((.(((((((((((........))))..)))))))))))........((..((((((((.........))))))))..))))))...... ( -27.90) >consensus UUGGUUGCAACUUUAUGUGGAUGAUCCAUUCCGACCAUAAAGUGCACACUUUACGACCCAUAACCAUGGGCAUGUUGGUUAUGCAUCGCCAUACAUG .(((((((.((((((((((((........))))..)))))))))))........((..((((((((.........))))))))..))))))...... (-27.10 = -27.14 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:35 2006