Locus 1025

Sequence ID X_DroMel_CAF1
Location 2,994,310 – 2,994,401
Length 91
Max. P 0.613047
window1652

overview

Window 2

Location 2,994,310 – 2,994,401
Length 91
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 84.10
Mean single sequence MFE -18.50
Consensus MFE -13.53
Energy contribution -15.53
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.73
SVM decision value 0.16
SVM RNA-class probability 0.613047
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2994310 91 + 22224390
GCUAUUUCCUGU------AUAUCCUGUGCGCACCCCAAAAACCAAAGAAGUAAAAACCGAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGG---
............------....((((((((..............(((((((...............)))))))(((((....))))).)))))).))--- ( -16.86)
>DroSec_CAF1 371390 90 + 1
GCUAUUUCCUGU------AUAUCCUGUGUGCACCCCAA-AACUAAAGAAGUAAAAACCCAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGG---
............------.....((((((((.......-.....(((((((...............)))))))(((((....)))))..))))))))--- ( -19.86)
>DroSim_CAF1 336610 90 + 1
GCUAUUUCCUGU------AUAUCCUGUGUGCACCCCAA-AACCAAAGAAGUAAAAACCCAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGG---
............------.....((((((((.......-.....(((((((...............)))))))(((((....)))))..))))))))--- ( -19.86)
>DroEre_CAF1 402997 94 + 1
ACUAUUUCCUGU------AUAUCCUGUGUGCACCCCAAAACAUAAAGAAGGCAAAACCCAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGGCGG
............------....(((((((((.............((((((.................))))))(((((....)))))..)))))))).). ( -19.53)
>DroYak_CAF1 384021 91 + 1
GCUGUUUCCUGU------AUAUCCUGUGUGCACCCCAAAAACUAAAGAAGGAAAAACCCAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGG---
............------.....((((((((..................((......)).............((((((....)))))).))))))))--- ( -19.60)
>DroAna_CAF1 574000 92 + 1
GCUAUUUCCUGUCUAGCUAUAUCCU----GCACCCUGUAAACUA-CCAUAUAUAUAC---AUAUAUAGUUUUUGACUUUUGUAAGUCACGCACACGGCGG
((((.........))))......((----((....(((((((((-...(((((....---))))))))))).((((((....)))))).)))....)))) ( -15.30)
>consensus
GCUAUUUCCUGU______AUAUCCUGUGUGCACCCCAAAAACUAAAGAAGUAAAAACCCAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGG___
.......................((((((((.............(((((((...............)))))))(((((....)))))..))))))))... (-13.53 = -15.53 +   2.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:33 2006