Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,977,307 – 2,977,403 |
Length | 96 |
Max. P | 0.904217 |
Location | 2,977,307 – 2,977,403 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.39 |
Mean single sequence MFE | -21.23 |
Consensus MFE | -13.35 |
Energy contribution | -14.35 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.22 |
Mean z-score | -2.14 |
Structure conservation index | 0.63 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.904217 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2977307 96 - 22224390 GCGGUUGGAAGCGAA-AACGAAGAACCGGCG--AGCAAUUCGUAGAUAAAAUGCGAAAAAUGAAAAAUAUGGUAUAGAAUUUCAUAUUUUGCGCUACCA .....(((.(((...-..((......))...--.((..((((((.......))))))......(((((((((.........)))))))))))))).))) ( -19.60) >DroSim_CAF1 320740 96 - 1 GCGGUUGGAAGCGAA-AACGAAGAAUCGGCG--AGAGAUUCGUAGAUAAAAUGUGAAAUAUGAAAAAUGUGGCAUGGAAUUUCAUAUUUUGCGCUACCA .....(((.(((...-.(((((...((....--.))..))))).........(..((((((((((.(((...)))....))))))))))..)))).))) ( -23.90) >DroEre_CAF1 384537 99 - 1 GCGGUUGCAAGCGAAAAACGAAGAAGCGGCGAAAAAAAAUUAUAAACAAAAUGUGAAAUAUGCAAAAUGUGGCAUAAAAUGUCAUAUUUUUUGCUGCCA ((........)).............(((((((((((...............(((.......)))...((((((((...))))))))))))))))))).. ( -21.20) >DroYak_CAF1 366863 95 - 1 GCGGUUGCCAGCGAA-AACGAA-AAGCGAC--AUAAAAAUAAUGGACACAAUGUGAAAUAUGCUAAAUGUGGCAGGAAAUUUCAUAUUCUGCACUAACA ...(((((...((..-..))..-..)))))--...........(..((.((((((((((.(((((....)))))....)))))))))).))..)..... ( -20.20) >consensus GCGGUUGCAAGCGAA_AACGAAGAAGCGGCG__AAAAAAUCAUAGACAAAAUGUGAAAUAUGAAAAAUGUGGCAUAAAAUUUCAUAUUUUGCGCUACCA ((((((((...((.....)).....)))))................(((((((((((((((((........))))...))))))))))))))))..... (-13.35 = -14.35 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:26 2006