Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 407,664 – 407,781 |
Length | 117 |
Max. P | 0.554428 |
Location | 407,664 – 407,781 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 74.36 |
Mean single sequence MFE | -25.83 |
Consensus MFE | -14.86 |
Energy contribution | -15.87 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.13 |
Mean z-score | -1.64 |
Structure conservation index | 0.58 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 407664 117 - 22224390 UAUAAACCUGGAUAGAUUGAGGCUUCACAACGU--GACAUUUUUAUAGCGUGAUCCUGAAAUCUAUUCUACUCGAAUAUUGAUUUCGACACGCAAAUUUCAAUCGCAUUUAGAUGCGAU .......((((((.((((((((..((((...))--))..........(((((.((..(((((((((((.....)))))..)))))))))))))...))))))))..))))))....... ( -28.80) >DroSec_CAF1 19382 113 - 1 UAUAACCCUGGAUAGAUUGAGGCUUCACAACGU--GCCGUUUUUGCAGCGUGACCCUGAAAUCUAUUCUACUCGAAUAUUGAUUUCGACACGCAAAUUCCAAUCGCAUCUAUAUG---- ........(((((.(((((.(((..........--))).........(((((....((((((((((((.....)))))..))))))).)))))......)))))..)))))....---- ( -28.10) >DroYak_CAF1 16158 95 - 1 -----------AUAGAUUG-GACUUCAAAACGAGAGACGUUCUGGCAGCGUGACCCUGAGUUCUAUUCUAGUCGAAUAUUGACUUCGACACACAAAUUGCAACCGCA------------ -----------.((((.((-((.((((...(....)(((((.....))))).....)))).)))).))))((((((.......))))))........(((....)))------------ ( -20.60) >consensus UAUAA_CCUGGAUAGAUUGAGGCUUCACAACGU__GACGUUUUUGCAGCGUGACCCUGAAAUCUAUUCUACUCGAAUAUUGAUUUCGACACGCAAAUUCCAAUCGCAU_UA_AUG____ .......((((((.(((((...................((....)).(((((....((((((((((((.....)))))..))))))).)))))......)))))..))))))....... (-14.86 = -15.87 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:20 2006