Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,975,960 – 2,976,074 |
Length | 114 |
Max. P | 0.984112 |
Location | 2,975,960 – 2,976,074 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 79.27 |
Mean single sequence MFE | -25.64 |
Consensus MFE | -16.40 |
Energy contribution | -16.56 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.51 |
Structure conservation index | 0.64 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2975960 114 - 22224390 CCCCUGCCAG--ACCC--CGCC-ACGUCCCCCCUCCCCCCCGAACGUUCCUCUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCUCGGGAGGU .........(--((..--....-..)))...((((((....(((........)))...((((((((((((.((((((.....))))))....)))....)))))))))....)))))). ( -24.00) >DroSec_CAF1 353600 105 - 1 CCCGUGCUGGCGAACC--------------GCCCCCCUCCCGUUCGUUCCUCUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCUCGGGAGGU ........((((...)--------------)))..(((((((................((((((((((((.((((((.....))))))....)))....)))))))))...))))))). ( -27.31) >DroSim_CAF1 319335 118 - 1 CCCGUGCUGGCGAACCAACGAC-CCCCCCCCCCCCCCUCCCGUUCGUUCCUCUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCUCGGGAGGU ((((....(((((((.((((..-.................)))).))))..........(((((((((((.((((((.....))))))....)))....))))))))))).)))).... ( -26.51) >DroEre_CAF1 382963 115 - 1 ACCCUGCCAG--ACCC--CUCGCCCCCCUCUGCCCUGCCCUGGUCGUUCCAUUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCGCGGGAGGU ..(((((.((--....--)).))..........(((((..(((.....))).......((((((((((((.((((((.....))))))....)))....)))))))))..)))))))). ( -24.40) >DroYak_CAF1 365414 94 - 1 CC-------------------------CUCCCCGCGUCCCUGGUCGUUCCAUUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCUCGGGAGGU .(-------------------------(((((.(((.(....).)))...........((((((((((((.((((((.....))))))....)))....)))))))))....)))))). ( -26.00) >consensus CCCCUGCCAG__AACC__C_____C__CCCCCCCCCCCCCCGGUCGUUCCUCUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCUCGGGAGGU ................................................((((((....((((((((((((.((((((.....))))))....)))....)))))))))....)))))). (-16.40 = -16.56 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:25 2006