| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,969,671 – 2,969,774 |
| Length | 103 |
| Max. P | 0.723747 |
| Location | 2,969,671 – 2,969,774 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.50 |
| Mean single sequence MFE | -13.11 |
| Consensus MFE | -7.84 |
| Energy contribution | -7.84 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2969671 103 + 22224390 AAAGCACGCAAAAAAAAAAAAAAA--AUUGCGAAACAUAACAACUAGGGAUAGAAUAUACACAAAUAUAUAGUUCAUAUACAA----GUACUAUGUGCAUAUAUAUG---CC ...((.(((((.............--.)))))...........(((....)))...........(((((((...((((((...----....))))))..))))))))---). ( -12.44) >DroSim_CAF1 313508 93 + 1 AAAGCACGCAAA---------AAA--AUUGCGAAACAUAACAACUAGGGAUAGAAUAUACACAAAUAUAUAGUUCAUAU--------GUACUAUGUACAUAUAUAUAUACCU ......(((((.---------...--.))))).............(((.((((((((((........))).))))((((--------((((...))))))))...))).))) ( -14.30) >DroYak_CAF1 357723 102 + 1 AAAGCACGCAAA---------AAAAUAUUGCGAAGCAUCACAACUAGGGAUAGAAUAUACACAACUAUAUAGUUUAUACACAAAUAUAUAGUACACACAUAUAUAUAUA-GC ...((.(((((.---------......)))))..)).....(((((...((((...........)))).))))).........(((((((((....)).)))))))...-.. ( -12.60) >consensus AAAGCACGCAAA_________AAA__AUUGCGAAACAUAACAACUAGGGAUAGAAUAUACACAAAUAUAUAGUUCAUAUACAA____GUACUAUGUACAUAUAUAUAUA_CC ......(((((................)))))...........(((....)))...........(((((((((.((((.............)))).)).)))))))...... ( -7.84 = -7.84 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:23 2006