Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,959,234 – 2,959,325 |
Length | 91 |
Max. P | 0.995276 |
Location | 2,959,234 – 2,959,325 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 96.70 |
Mean single sequence MFE | -18.54 |
Consensus MFE | -16.74 |
Energy contribution | -16.74 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.90 |
SVM decision value | 2.56 |
SVM RNA-class probability | 0.995276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2959234 91 - 22224390 AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAU-CAAGAGCCGCAAAAAAGGCACGCAAAUUUAAAUGAAAAUUCA .((.(((((.....(((((((...)))))))..((......))..))))-)....(((........)))..))................... ( -18.20) >DroSec_CAF1 336500 90 - 1 AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAU-CAGGAGCCGCAAA-AAGGCACGCAAAUUUGAAUGAAAAUUCA .((.(((((.....(((((((...)))))))..((......))..))))-)....(((.....-..)))..)).....(((((....))))) ( -21.40) >DroSim_CAF1 302338 90 - 1 AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAU-CAGGAGCCGCAAA-AAGGCACGCAAAUUUAAAUGAAAAUUCA .((.(((((.....(((((((...)))))))..((......))..))))-)....(((.....-..)))..))................... ( -17.90) >DroEre_CAF1 365733 90 - 1 AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAU-CAGGAGCCGCAAA-AAGGCAAGCAAAUUUAAAUGAAAUUUCA .((.(((((.....(((((((...)))))))..((......))..))))-)....(((.....-..)))..))................... ( -17.80) >DroYak_CAF1 346869 91 - 1 AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAUUCAGGAGCCACAAA-AAGGCACGCAAAUUUAAAUGAAAUUUCA .((..(((((....(((((((...)))))))..............((........))......-..)))))))................... ( -17.40) >consensus AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAU_CAGGAGCCGCAAA_AAGGCACGCAAAUUUAAAUGAAAAUUCA .((...........(((((((...)))))))........................(((........)))..))................... (-16.74 = -16.74 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:21 2006