| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,957,661 – 2,957,751 |
| Length | 90 |
| Max. P | 0.831949 |
| Location | 2,957,661 – 2,957,751 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 90.39 |
| Mean single sequence MFE | -26.56 |
| Consensus MFE | -21.62 |
| Energy contribution | -21.26 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2957661 90 - 22224390 ---GUUGCUGUUGUCUUUUGUCAUUU-UUGGCAAUUGGCUAAAAAGUUAAUGGAGUGGGAAACGCGAAG---CGGUUUUUCACCGACUUUCGCACGA ---...(((...(((..((((((...-.))))))..))).....)))..........(....)((((((---((((.....)))).).))))).... ( -23.60) >DroSec_CAF1 334950 90 - 1 ---GUUGCUGUUGUCUUUUGUCAUUUUUUGGCAAUUGGUUAA-AAGUUAAUGGAGUGGGAAACGCGCAG---GGGUUUUUCACCGACUUUCAAGCGA ---.(((((...(((..((((((.....))))))((.((((.-....)))).))(((..((((.(....---).))))..))).))).....))))) ( -22.80) >DroSim_CAF1 300794 90 - 1 ---GUUGCUGUUGUCUUUUGUCAUUUUUUGGCAAUUGGCUAA-AAGUUAAUGGAGUGGGAAACGCGCAG---GGGUUUUUCACCGACUUUCAAGCGA ---.(((((...(((..((((((.....))))))..)))..(-(((((....(.(((..((((.(....---).))))..))))))))))..))))) ( -25.70) >DroEre_CAF1 364313 94 - 1 GUCGUUGCUGUUGUCUUUUGUCAUUU-UUGGCAAUUGGCUAA-AAGUUAAUGGAGUGGGAAACUCGGAAGG-GGGUUUUCCACCGACUUUCAAGCGA ((((..(((...(((..((((((...-.))))))..)))...-.))).......(((((((((((......-))))))))))))))).......... ( -31.00) >DroYak_CAF1 345311 94 - 1 GU-GUUGCUGUUGUCUUUUGUCAUUU-UUGGCAAUUGGCUAA-AAGUUAAUGGAGUGGGAAACUCAAAGGGGGGGUUUUCCACCGACUUUCAAGCGA ..-.(((((...(((..((((((...-.))))))..)))..(-(((((....(.(((((((((((.......))))))))))))))))))..))))) ( -29.70) >consensus ___GUUGCUGUUGUCUUUUGUCAUUU_UUGGCAAUUGGCUAA_AAGUUAAUGGAGUGGGAAACGCGAAG___GGGUUUUUCACCGACUUUCAAGCGA ....((((((..(((...(((((.....)))))(((((((....))))))).(.(((((((((.(........))))))))))))))...)).)))) (-21.62 = -21.26 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:20 2006